BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916316

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48070.2 | Symbols:  | RING/U-box superfamily protein | chr3...  95.3    2e-19


> AT3G48070.2 | Symbols:  | RING/U-box superfamily protein | chr3:17750712-17752761 
FORWARD LENGTH=1307
Length=1307

 Score = 95.3 bits (51),  Expect = 2e-19
 Identities = 53/54 (98%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  145  GCCAAATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAGCAATGGCTTTCTCAA  198
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  254  GCCAAATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAACAATGGCTTTCTCAA  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5