BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916323
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48340.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 2218 0.0
> AT5G48340.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:19590473-19593000
FORWARD LENGTH=2156
Length=2156
Score = 2218 bits (1201), Expect = 0.0
Identities = 1440/1553 (93%), Gaps = 25/1553 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAATCTGTTCTTGTCTGAACCAAAGAGGAACGATGTTGCCTACAACAGTAGCAAC 60
||||||||| ||||||| |||||||||||| ||||||||| |||| | || |||||
Sbjct 214 ATGGTGAATTTGTTCTTATCTGAACCAAAGTGGAACGATGATGCCCAGAAAAGTAG---T 270
Query 61 AACATCAATGTGATTTTGCCTCTGTTGAACAAATTAGGCTCTCAAATTCAATCGTTGGTC 120
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 271 AACATCAATGTTATTTTGCCTCTGTTAAACAAATTAGGCTCTCAAATTCAATCATTGGTG 330
Query 121 ACTCATGGAGCTCGATCAGAAGCTAGACTTTGGCTTTGTAGTGCTCTTTCTACTATTTCT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 331 ACTCATGGAGCTCGATCAGAAGCTAGGCTTTGGCTTTGTAGTGCTCTTTCCACTATTTCT 390
Query 181 ATATCTCCTAGGAAGCAACTTAGTATTTTCATGAAGTTATTGAGATCAAAACCCAGAAAG 240
||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 391 ATATCTCCTAGCAAGCAACTTAATATCTTCATGAAGTTATTGAGATCAAAACCTAGAAAG 450
Query 241 ATGCAGTTTTTATCTCA-GTTTCTGACAATGATGTTCGAAAAGAGACCGAGGAAACTTGG 299
||||||||||||||||| |||| ||||||||||||| || |||||||| |||||||||||
Sbjct 451 ATGCAGTTTTTATCTCAGGTTT-TGACAATGATGTTTGAGAAGAGACCAAGGAAACTTGG 509
Query 300 ATCTTTGTTAGCCAAAAGAAGTTATATACTTGAGAAGTTCTTTGAAGGGAATCCGAAGCG 359
|| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 510 ATTTTTGTTAGCTAAAAGAAGTTATATACTTGAGAAGTTCTTTGAAGGGAATCAGAAGCG 569
Query 360 TATACTAGAGTGGTTCTCTGAGTTTGCTTATGATGGTGGGTCTGATCACAA-ACGTGGTG 418
||||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 570 TATACTAGAGTGGTTTTCTGAGTTTGCTTATGATGGTGGGTCTGATCACAAGA-GAGGTG 628
Query 419 CAAAAGCATTGGCGCAGTTTGCGTTTGCGAATCGGGATATATGTTGGGAAGAGCTCGAGT 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 629 CAAAAGCATTGGCGCAGTTTGCGTTTGCGAATCGGGATATTTGTTGGGAAGAGCTTGAGT 688
Query 479 GGCGAGGTAAACACGGGCAATCGCCTGCGGTTGTTGCTACAAAGCCTCATTATCTTCTTG 538
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 689 GGCGAGGTAAACATGGGCAATCGCCTGCGGTTGTAGCTACAAAGCCTCATTATCTTCTTG 748
Query 539 ATTTGGATG-TGCAACGAACCATTGAGAATTTTCTCGACAATGTTCCTGAATTCTGGTCT 597
|||| || | || || |||| ||| |||||||||| |||||||| ||||| |||||||||
Sbjct 749 ATTTAGACGTTG-AAAGAACTATTCAGAATTTTCTTGACAATGTCCCTGAGTTCTGGTCT 807
Query 598 TCCAATGAGTTTGCTGAGTCGCTTAAAGATGGACAGATTTTGTTTCTTGACACGAAATTC 657
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 808 TCCAATGAGTTTGCTGAGTCGCTTAAAGATGGACAGATTTTGTTTCTTGATACCAAATTC 867
Query 658 TTTATAGATCTCTTTATTGGTTTCATGTATGAAGAAGATATGGATGATGTTTGGGATGTT 717
|||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 868 TTTATAGATCTCTTTATTCGTTTCATGTATGAAGAAGATATGTATGATGTGTGGGATGCT 927
Query 718 GTTGAGGAGTTTCTTAGGGAGGAGTCTTTCTCTTCGTTAACACAGCATCTCCTTATCACT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GTTGAGGAGTTTCTTAGGGAGGAGTCTTTCTCTTCGTTAACACAGCATCTCCTTATCACT 987
Query 778 CTTGAAGAACGTGACTTGTGTCGATTTCTTGAATTGCTTGGCAACTATTTCGAGCCAAGT 837
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 988 CTTGAAGAACGTGACTTGTGTCGATTTCTTGAATTGCTTGGTAACTATTTTGAGCCAGGT 1047
Query 838 ATTGAATCTTGGGATAGTGGTGACTCGTCTTGCTGGCTCGGGGTTGTTCTTTCAAGATAT 897
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 1048 ATTGAATCTTGGGATAGTGGTGACTCGTCTCGCTGGCTTGGGGTTCTTCTTTCAAGATAT 1107
Query 898 GTTGACACAGAATCGATTGACGAGCTGCTGCTGCTGAATTCTATTATCAACCAAGGTCGT 957
|||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1108 GTTGACACAGAATCTATCGACGAGCTGCTGCTGCTGAGTTCTATTATCAATCAAGGTCGT 1167
Query 958 CAGCTGCTGCGGCTTGTACGTGATGAAAACGGGAATGATGAAGGAGAAATGCTGAAAGAA 1017
||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1168 CAGTTGCTGCGGCTTGTACGTGATGAAAACGGGAATGATGAGGGAGAACTGTTGAAAGAA 1227
Query 1018 ACCATGGCAGAGATCTGCAGAGGTTTGGAAAACGGCAA-TAGCTTTTCTCTAATTCTGAG 1076
|||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1228 ACCATGGCAGAGATATGCAGAGGTTTGGAAAACGA-AAGTAGCTTTTCTGTAATTCTGAG 1286
Query 1077 AGAGCTTTCGAAGATGAAACACATAGAGGTGATAAAATTACTCGGGTTACTTTCTTGGAC 1136
|||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1287 AGAGCTCTCGAAGATGAAACACATACAGGTGATAAAATTACTCGGGCTACTTTCTTGGAC 1346
Query 1137 TATTCACTTTAGATTATCAGAGGAATGTCAGACTCCAGATTCATGGGAGCTTCTATTTAG 1196
||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1347 TATTCACTTCAGACTATCAGAGGAATGTCAGACGCCAGATTCTTGGGAGCTTCTATTTAG 1406
Query 1197 AGAAAACGGGATTGAGTTCCGCAGCTCTGGTGACCACTCGTTGCTAAGCCATAATGGATT 1256
|||||| ||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||
Sbjct 1407 AGAAAATGGGATTGAGTTCCGCAGGTCTAGTGACCATTCGTTGCTAAGCTATAATGGATT 1466
Query 1257 CTCTGAAGAAAGTGAATCTGACTCAGATAGTAGAAGCCATGTTTCTAAAaagaggcacaa 1316
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 1467 CTCTGAAGAAAGTGAATCTGACTCAGATAGTAGAAGCCGTGTGTCTAAGAAGAGGCACAA 1526
Query 1317 gagggagaagaagacaagaaagatgaagaagaagatgagggcttttgatgatgatgatga 1376
|||||||||||||| |||||||| ||| ||||||| | || |||||||||||||||||||
Sbjct 1527 GAGGGAGAAGAAGAAAAGAAAGAAGAAAAAGAAGA-G-GG-CTTTTGATGATGATGATGA 1583
Query 1377 tgacgatgatctcggtgatgatgaGCTTATAGGTCTGCGT-CAAATAAATCGAAGTTGGT 1435
| || || | ||||||||||||| ||| ||||| | ||| ||| |||||||||||
Sbjct 1584 T--CG-TG-----G-TGATGATGAGCTTTTAGATCTGCATTCAA-TAAGTCGAAGTTGGT 1633
Query 1436 TGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGTGTGGATTTACCGGAGTACATCG 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1634 TGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGTGTGGATTTACCGGAATACATCG 1693
Query 1496 CAAGGTATTGTTTGTCCACATGGATGAAGTGGTTACTAGCTAGACAAAAATGA 1548
||| |||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 1694 CAAAGTATTGTTTGTCGACATGGATGAAGGGGTTATTAGCTAGACAAAAATGA 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5