BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916339 Length=1671 Score E Sequences producing significant alignments: (Bits) Value AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-1... 2614 0.0 AT4G12420.1 | Symbols: SKU5 | Cupredoxin superfamily protein | ... 176 6e-43 > AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635664 REVERSE LENGTH=1918 Length=1918 Score = 2614 bits (1415), Expect = 0.0 Identities = 1589/1670 (95%), Gaps = 24/1670 (1%) Strand=Plus/Plus Query 1 ATGCGGTGCTTTCCACCGCACTTCTGGTGCACCTCCGTT-GTCCTTTTCTTGTCGGTTAC 59 ||||||||||||||||| | ||| |||||||||||| || ||| |||||||||||||||| Sbjct 53 ATGCGGTGCTTTCCACCTCCCTTATGGTGCACCTCC-TTGGTCGTTTTCTTGTCGGTTAC 111 Query 60 CGGAACCCTAGCCGCCGATCCTTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 119 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 112 CGGAGCCCTAGCCGCCGATCCCTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 171 Query 120 TTCTCCTTTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 179 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 TTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 231 Query 180 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 291 Query 240 ATTGCTTCTTACATGGAATGGGATACAACATAGGAAAAATTCATGGCAAGATGGTGTTTT 299 ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 292 ATTGCTTCTTACATGGAATGGAATCCAACATAGGAAAAACTCATGGCAAGATGGTGTTTT 351 Query 300 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 411 Query 360 TCAGATTGGTAGTTTCTTTTATTTTCCATCTACAAATTTTCAGAGAGCTTCTGGTGGGTA 419 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 412 TCAGATTGGTAGTTTCTTTTATTTTCCTTCTACAAATTTTCAAAGAGCTTCTGGTGGTTA 471 Query 420 TGGAGGGATTATTATCAATAATCGAGAAATCATTCCGGTTCCATTT-GCTCTTCCTGATG 478 ||||||||||||| |||||||||| | |||||||||||||| ||| ||||||||||||| Sbjct 472 TGGAGGGATTATTGTCAATAATCGCGCTATCATTCCGGTTCC-TTTCGCTCTTCCTGATG 530 Query 479 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 590 Query 539 ATGTTGAGAGTAAGAAAGGCCTTGGACCTCCAGATGGTATTCTTATAAATGGATTTGGAC 598 |||||||||||||||| |||||| ||||||| ||||||||| | || ||||||||||||| Sbjct 591 ATGTTGAGAGTAAGAACGGCCTTCGACCTCCGGATGGTATTGTCATCAATGGATTTGGAC 650 Query 599 CTTTTCCTTACACTCGTGAGCTAGCTTCGAATAATTTTCCTTTTGGGACAATAAACGTTG 658 ||||| | | || | | | | | | | |||||||||||| |||||||||| Sbjct 651 CTTTTGC-T----TC-T-A---A---T-G-GT-A--GTCCTTTTGGGACCATAAACGTTG 692 Query 659 AACCAGGACGAACATATCGTTTTCGTGTTCACAACAGTGGCATTGCAACCAGCCTGAATT 718 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct 693 AACCAGGACGAACATATCGTTTTCGTGTTCACAATAGTGGCATTGCGACCAGCTTGAATT 752 Query 719 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAGTTCAGC 778 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 753 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAATTCAGC 812 Query 779 AGAATTATACGAATATGGACATTCATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 838 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 813 AGAATTATACGAATATGGATATACATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 872 Query 839 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTTCTACATCCATCA 898 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 873 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTGCTACATCCATCA 932 Query 899 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 933 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 992 Query 959 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1052 Query 1019 GGTTGAATTTGTCAGCTGGAGCTGCCCGCCCAAACCCGCAGGGATCTTTCAAATATGGCC 1078 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1053 GGTTGAATTTGTCATCTGGAGCTGCCCGTCCAAACCCGCAGGGATCTTTCAAATATGGCC 1112 Query 1079 AGATTACAGTAACTGATGTTTATGTGATTGTCAACCGATCACCAGAGATGATAGAAGGG- 1137 ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| Sbjct 1113 AGATTACAGTAACTGATGTGTATGTGATTGTCAACCGACCACCAGAGATGATAGA-GGGA 1171 Query 1138 CGATTGCGTGCCACTCTTAATGGTATATCATACTTACCTCCTTCAACACCCCTAAAGCTT 1197 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1172 CGATTGCGTGCAACTCTTAATGGTATATCATACTTACCTCCTGCAACACCCCTAAAGCTT 1231 Query 1198 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCCAAAAGACCGATGAAT 1257 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 1232 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCAAAAAGGCCAATGAAT 1291 Query 1258 AGGCACCCCAGGGTTGATACCTCTGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1317 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1292 AGGCATCCCAGGGTTGATACCTCAGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1351 Query 1318 ATATTTCAGAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1377 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1352 ATATTTCAAAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1411 Query 1378 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGG 1437 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1412 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGT 1471 Query 1438 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTTCATGGACGGCCATCTTGGTT 1497 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1472 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTGCATGGACGGCCGTCTTGGTT 1531 Query 1498 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTCGCCTCATGGTATCTG 1557 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1532 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTAGCCTCATGGTATCTT 1591 Query 1558 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACAGTGACTCGTCTGAGAAT 1617 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 1592 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACATTGACTCATCTGAGAAT 1651 Query 1618 TCCGTTCCTGACAACACCATATATTGTGGTCGGCTCTCACCATTACAAAA 1667 ||||||||| | ||| | |||||||||||||||||||||||||||||||| Sbjct 1652 TCCGTTCCTAAAAACTCTATATATTGTGGTCGGCTCTCACCATTACAAAA 1701 > AT4G12420.1 | Symbols: SKU5 | Cupredoxin superfamily protein | chr4:7349662-7353074 REVERSE LENGTH=2249 Length=2249 Score = 176 bits (95), Expect = 6e-43 Identities = 253/326 (78%), Gaps = 24/326 (7%) Strand=Plus/Plus Query 103 GTCTCTTACCTCT-CTGCTTCTCCT-TTCGGCACT-CGTCAACAGGTAATTGGGATAAAT 159 ||||||||| | | ||||||||||| || || | | ||||||||| |||| |||||| Sbjct 297 GTCTCTTACAT-TACTGCTTCTCCTCTT-GG-TGTCCCTCAACAGGTCATTGCTATAAAT 353 Query 160 GGGCAA-TTTCCTGGTCCGATTCTAAACGTAACTACGAATTG-GAATGTTGTTATGAATG 217 || || ||||||||||| | | || || || || || || ||| | ||| | |||| Sbjct 354 -GGAAAGTTTCCTGGTCCTACAATCAATGTTACAACCAA-TGAAAATCTGGTTGTTAATG 411 Query 218 TGAAG-AATAATCTT-GATGAGCCA-TTGCTTCTTACA-TGGAATGGGATACAACATAGG 273 | || || || || || ||| | || |||||| || |||||||| || ||||| | | Sbjct 412 T-CAGAAACAA-GTTAGACGAGGGACTT-CTTCTT-CATTGGAATGGAATCCAACAGA-G 466 Query 274 AAAAAT-TCATGGCAAGATGGTGTTTTGGGAACTAATTGTCCAATTCCTTC-TGGTTGGA 331 | | |||||||||||||| ||||| ||||| ||||||||||| || | | |||| Sbjct 467 ACGTGTGTCATGGCAAGATGGAGTTTTAGGAACCAATTGTCCAATCCCACCAAAG-TGGA 525 Query 332 ATTGGACTTATGAGTTTCAAGTTAAAGATCAGATTGGTAGTTTCTTTTATTTTCCATCTA 391 |||||||||||||||||||||||||||| || |||||||||||||| || ||||||||| Sbjct 526 ATTGGACTTATGAGTTTCAAGTTAAAGACCAAATTGGTAGTTTCTTCTACTTTCCATCT- 584 Query 392 CAA-ATTTTCAGAGAGCTTCTGGTGG 416 | | |||| ||||||||||||||||| Sbjct 585 CTACATTTCCAGAGAGCTTCTGGTGG 610 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82579896525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5