BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916339
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-1... 2614 0.0
AT4G12420.1 | Symbols: SKU5 | Cupredoxin superfamily protein | ... 176 6e-43
> AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635664
REVERSE LENGTH=1918
Length=1918
Score = 2614 bits (1415), Expect = 0.0
Identities = 1589/1670 (95%), Gaps = 24/1670 (1%)
Strand=Plus/Plus
Query 1 ATGCGGTGCTTTCCACCGCACTTCTGGTGCACCTCCGTT-GTCCTTTTCTTGTCGGTTAC 59
||||||||||||||||| | ||| |||||||||||| || ||| ||||||||||||||||
Sbjct 53 ATGCGGTGCTTTCCACCTCCCTTATGGTGCACCTCC-TTGGTCGTTTTCTTGTCGGTTAC 111
Query 60 CGGAACCCTAGCCGCCGATCCTTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 119
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 112 CGGAGCCCTAGCCGCCGATCCCTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 171
Query 120 TTCTCCTTTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 231
Query 180 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 291
Query 240 ATTGCTTCTTACATGGAATGGGATACAACATAGGAAAAATTCATGGCAAGATGGTGTTTT 299
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 292 ATTGCTTCTTACATGGAATGGAATCCAACATAGGAAAAACTCATGGCAAGATGGTGTTTT 351
Query 300 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 411
Query 360 TCAGATTGGTAGTTTCTTTTATTTTCCATCTACAAATTTTCAGAGAGCTTCTGGTGGGTA 419
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 412 TCAGATTGGTAGTTTCTTTTATTTTCCTTCTACAAATTTTCAAAGAGCTTCTGGTGGTTA 471
Query 420 TGGAGGGATTATTATCAATAATCGAGAAATCATTCCGGTTCCATTT-GCTCTTCCTGATG 478
||||||||||||| |||||||||| | |||||||||||||| ||| |||||||||||||
Sbjct 472 TGGAGGGATTATTGTCAATAATCGCGCTATCATTCCGGTTCC-TTTCGCTCTTCCTGATG 530
Query 479 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 590
Query 539 ATGTTGAGAGTAAGAAAGGCCTTGGACCTCCAGATGGTATTCTTATAAATGGATTTGGAC 598
|||||||||||||||| |||||| ||||||| ||||||||| | || |||||||||||||
Sbjct 591 ATGTTGAGAGTAAGAACGGCCTTCGACCTCCGGATGGTATTGTCATCAATGGATTTGGAC 650
Query 599 CTTTTCCTTACACTCGTGAGCTAGCTTCGAATAATTTTCCTTTTGGGACAATAAACGTTG 658
||||| | | || | | | | | | | |||||||||||| ||||||||||
Sbjct 651 CTTTTGC-T----TC-T-A---A---T-G-GT-A--GTCCTTTTGGGACCATAAACGTTG 692
Query 659 AACCAGGACGAACATATCGTTTTCGTGTTCACAACAGTGGCATTGCAACCAGCCTGAATT 718
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct 693 AACCAGGACGAACATATCGTTTTCGTGTTCACAATAGTGGCATTGCGACCAGCTTGAATT 752
Query 719 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAGTTCAGC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 753 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAATTCAGC 812
Query 779 AGAATTATACGAATATGGACATTCATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 838
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 813 AGAATTATACGAATATGGATATACATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 872
Query 839 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTTCTACATCCATCA 898
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 873 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTGCTACATCCATCA 932
Query 899 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 992
Query 959 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1052
Query 1019 GGTTGAATTTGTCAGCTGGAGCTGCCCGCCCAAACCCGCAGGGATCTTTCAAATATGGCC 1078
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1053 GGTTGAATTTGTCATCTGGAGCTGCCCGTCCAAACCCGCAGGGATCTTTCAAATATGGCC 1112
Query 1079 AGATTACAGTAACTGATGTTTATGTGATTGTCAACCGATCACCAGAGATGATAGAAGGG- 1137
||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 1113 AGATTACAGTAACTGATGTGTATGTGATTGTCAACCGACCACCAGAGATGATAGA-GGGA 1171
Query 1138 CGATTGCGTGCCACTCTTAATGGTATATCATACTTACCTCCTTCAACACCCCTAAAGCTT 1197
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1172 CGATTGCGTGCAACTCTTAATGGTATATCATACTTACCTCCTGCAACACCCCTAAAGCTT 1231
Query 1198 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCCAAAAGACCGATGAAT 1257
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1232 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCAAAAAGGCCAATGAAT 1291
Query 1258 AGGCACCCCAGGGTTGATACCTCTGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1317
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGGCATCCCAGGGTTGATACCTCAGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1351
Query 1318 ATATTTCAGAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1377
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 ATATTTCAAAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1411
Query 1378 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGG 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGT 1471
Query 1438 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTTCATGGACGGCCATCTTGGTT 1497
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1472 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTGCATGGACGGCCGTCTTGGTT 1531
Query 1498 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTCGCCTCATGGTATCTG 1557
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1532 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTAGCCTCATGGTATCTT 1591
Query 1558 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACAGTGACTCGTCTGAGAAT 1617
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1592 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACATTGACTCATCTGAGAAT 1651
Query 1618 TCCGTTCCTGACAACACCATATATTGTGGTCGGCTCTCACCATTACAAAA 1667
||||||||| | ||| | ||||||||||||||||||||||||||||||||
Sbjct 1652 TCCGTTCCTAAAAACTCTATATATTGTGGTCGGCTCTCACCATTACAAAA 1701
> AT4G12420.1 | Symbols: SKU5 | Cupredoxin superfamily protein
| chr4:7349662-7353074 REVERSE LENGTH=2249
Length=2249
Score = 176 bits (95), Expect = 6e-43
Identities = 253/326 (78%), Gaps = 24/326 (7%)
Strand=Plus/Plus
Query 103 GTCTCTTACCTCT-CTGCTTCTCCT-TTCGGCACT-CGTCAACAGGTAATTGGGATAAAT 159
||||||||| | | ||||||||||| || || | | ||||||||| |||| ||||||
Sbjct 297 GTCTCTTACAT-TACTGCTTCTCCTCTT-GG-TGTCCCTCAACAGGTCATTGCTATAAAT 353
Query 160 GGGCAA-TTTCCTGGTCCGATTCTAAACGTAACTACGAATTG-GAATGTTGTTATGAATG 217
|| || ||||||||||| | | || || || || || || ||| | ||| | ||||
Sbjct 354 -GGAAAGTTTCCTGGTCCTACAATCAATGTTACAACCAA-TGAAAATCTGGTTGTTAATG 411
Query 218 TGAAG-AATAATCTT-GATGAGCCA-TTGCTTCTTACA-TGGAATGGGATACAACATAGG 273
| || || || || || ||| | || |||||| || |||||||| || ||||| | |
Sbjct 412 T-CAGAAACAA-GTTAGACGAGGGACTT-CTTCTT-CATTGGAATGGAATCCAACAGA-G 466
Query 274 AAAAAT-TCATGGCAAGATGGTGTTTTGGGAACTAATTGTCCAATTCCTTC-TGGTTGGA 331
| | |||||||||||||| ||||| ||||| ||||||||||| || | | ||||
Sbjct 467 ACGTGTGTCATGGCAAGATGGAGTTTTAGGAACCAATTGTCCAATCCCACCAAAG-TGGA 525
Query 332 ATTGGACTTATGAGTTTCAAGTTAAAGATCAGATTGGTAGTTTCTTTTATTTTCCATCTA 391
|||||||||||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct 526 ATTGGACTTATGAGTTTCAAGTTAAAGACCAAATTGGTAGTTTCTTCTACTTTCCATCT- 584
Query 392 CAA-ATTTTCAGAGAGCTTCTGGTGG 416
| | |||| |||||||||||||||||
Sbjct 585 CTACATTTCCAGAGAGCTTCTGGTGG 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5