BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916345
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT2G10410.1 | Symbols: SADHU1-1 | transposable element gene | c... 272 2e-72
> AT2G10410.1 | Symbols: SADHU1-1 | transposable element gene |
chr2:4005995-4007044 REVERSE LENGTH=1050
Length=1050
Score = 272 bits (147), Expect = 2e-72
Identities = 240/283 (85%), Gaps = 13/283 (5%)
Strand=Plus/Minus
Query 130 GGAAAACCGCCACAACCGGGCCCCAATACCTCATCTCCCCAACCTAGCAAGAAGAAGGAA 189
||| |||||||||||||| | |||||| |||| ||||||||||||||||||| ||||||
Sbjct 645 GGAGAACCGCCACAACCGAGACCCAATCCCTCCTCTCCCCAACCTAGCAAGACGAAGGAT 586
Query 190 TCGAAACTCACCCTCACCTCCACCGATGCCCACCCTCAA--ATCTC-CCCTAGAGCAAAC 246
|||||||| |||| || |||||| ||||| ||||| || | ||| ||| | |||||||
Sbjct 585 TCGAAACTTACCCCCATCTCCACTGATGCTCACCC--AAGGACCTCTCCCAA-AGCAAAC 529
Query 247 CTTACTTCAGATCCGGCGAAGGAAAAACCAGCCACGGCGGCGGAAGA-G-TCGT-TGGCT 303
|| |||||||||||||| |||| ||||| ||| ||||||| | |||| | || | |||||
Sbjct 528 CTCACTTCAGATCCGGCTAAGGGAAAACTAGCTACGGCGGAG-AAGACGGTC-TCTGGCT 471
Query 304 CAGACGAA-CCATCTTCCACCAAGATCCGGCCAAGGAACACCCGCAGCTCGCCATCTAGG 362
||| | || ||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 470 CAGGC-AAGCCATCATCCACCAAGATCCAGCTAAGGAACACCCGCAGCTCGCCATCTAGG 412
Query 363 ATCCGGCCAAAGAACCACCGTTAATCCCTTCGCAAAGTGGTGA 405
||||| ||||||| |||| ||||||| | |||||||| |||||
Sbjct 411 ATCCGACCAAAGATCCACTGTTAATCTCGTCGCAAAGAGGTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5