BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916348
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits... 366 1e-100
> AT4G19140.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469664-10471390
FORWARD LENGTH=1193
Length=1193
Score = 366 bits (198), Expect = 1e-100
Identities = 237/256 (93%), Gaps = 1/256 (0%)
Strand=Plus/Plus
Query 336 GTCATGGCTTAATGGAAAAGCAACACCAAAGTACTGGAAAGATGATGTGATTGCTGGCAT 395
|||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||
Sbjct 799 GTCATGGCTTAATGGAGAATCAACACCAAAGTACTGGAAATATGATGTGATCGCTGGCAT 858
Query 396 TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCGTACGGATCTTACGACATGT 455
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 859 TGTCTCTGGCTTCGCAACTTCCATAATCACAGTCTTCATCATAAGGATCTTAAGACATGC 918
Query 456 AAAATCTTGGTTCCCTCGAGCTTGTTGTTCAGTAAAGAGCCAGTTTTCTAAGGTGAATCT 515
||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 919 AAAATCTTGGTTCCCTCAAGCTTGTTGTTCAGTTAAGAGACAGTTTTCTAAGGTGAATAT 978
Query 516 CTTGGTACAAGTGAAGCGGTGCATGTTTGCTTCTTGTTTATTTCTCGGTTCTCGGATGAA 575
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 979 ATTGGTACAAGTGAAACG-TGCATGTTTGCTTCTTGTTTACTTCTCGGTTCTCGGATGGA 1037
Query 576 TGGCGATACAATACTT 591
|||| | |||||||||
Sbjct 1038 TGGCTACACAATACTT 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5