BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916349
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein | c... 841 0.0
AT2G40450.1 | Symbols: | BTB/POZ domain-containing protein | c... 318 4e-86
> AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein |
chr5:19658080-19658882 FORWARD LENGTH=675
Length=675
Score = 841 bits (455), Expect = 0.0
Identities = 612/684 (89%), Gaps = 26/684 (4%)
Strand=Plus/Plus
Query 1 ATGGCAACTCTAACTAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCaaaa 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60
Query 61 aaaTGGAAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGGCAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120
Query 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAGGAAGATGTTGGAATTAGAG 180
|||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAATTAGAC 180
Query 181 GAGGTT-AAGACTTCGACAAAACAAGTGGAAACAATCACTCTCTCAGATATGAAACAAGA 239
||| || ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||
Sbjct 181 GAG-TTCAAGACTTCGACTAAACATGTGGAAACAATTACTCTTTCAGAGATGAAACATGA 239
Query 240 AGAGTTAGAAGCGTTTGTTGAGTTTATATACAGTGATGGCACAATGCTTTCTGCTAACGT 299
|||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 240 AGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTTTCTGCCAACGT 299
Query 300 GAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAATACGAGATTATGCATCTTCG 359
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||
Sbjct 300 GAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATTCTGCATCTACG 359
Query 360 AGACCTATGCAGAACCAAGCTTATATCTTCTCTGAGTTTGTCGAATTCTCTTGACCTCCT 419
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 AGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCTCTTGACCTCCT 419
Query 420 TGAGCTCGCCCAAATCCCTTTTGACAAAGTCCTTCA-CGATGCA-GCCTTT-AGTTATAT 476
|| |||||| ||||||||||||||||||||||| || ||||| | | ||| ||||||||
Sbjct 420 TGTGCTCGCTCAAATCCCTTTTGACAAAGTCCT-CAACGATGAAAG--TTTCAGTTATAT 476
Query 477 CAAAAAGAATATAA-TAACGATTGCTAGCTCTGATGAGTTCAAATTGTTCGTCGCCAGTA 535
||||| ||||||| || ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 477 AAAAAATAATATAAGTA-CGATTGCTAGCTCTGATGAGTTCAAGTTGTTCGTCGCCGGTA 535
Query 536 ACCCAAATCTTTCCGTGGAGATAATGAAGGCTTCTCT--T-ACT-TGTACAGCTGTAAGC 591
||||||||||| |||||||||||||||||| |||||| | ||| | ||| | || ||
Sbjct 536 ACCCAAATCTTGCCGTGGAGATAATGAAGGTTTCTCTCATTACTCT-TACT--T-TACGC 591
Query 592 TGTTC-TAACTGTGGTTACTA-CAATAATCCTCTTAG-TG-GAAGCTGTTGTAATTGTGG 647
||||| | |||||||| | | | ||| || || || | | | ||||||||||||| |
Sbjct 592 TGTTCCTC-CTGTGGTT-CAAACCATAGTCTTCA-AGGTATGTA-CTGTTGTAATTGTTG 647
Query 648 TCGCTTCGGTACTCTTCGTTGGAT 671
||||| |||||||||||||| |||
Sbjct 648 TCGCTACGGTACTCTTCGTTTGAT 671
> AT2G40450.1 | Symbols: | BTB/POZ domain-containing protein |
chr2:16892024-16892790 REVERSE LENGTH=630
Length=630
Score = 318 bits (172), Expect = 4e-86
Identities = 400/506 (79%), Gaps = 31/506 (6%)
Strand=Plus/Plus
Query 82 CTCAAGGCAAAGA-ATAGTGATGAGGGTTCAGCTA-TCTCTGCCCACAAACTTATTC-TG 138
|||||||| | || | ||||||||| | || ||| | || |||||||| ||| || ||
Sbjct 82 CTCAAGGC-AGGAGACAGTGATGAGACTACATCTATTTTC-GCCCACAAGCTT-GTCTTG 138
Query 139 GCATCAAGATCGGAGGTTTTTAGGAAGATGTTGGAATTAGAGGAGGTT-AAGACTTCGA- 196
| ||||||| ||||| |||| |||||| ||||||| ||| || ||| ||| |||| |
Sbjct 139 GTGGCAAGATCAGAGGTGTTTAAGAAGATATTGGAATCAGACGA-GTTCAAGGCTTC-AT 196
Query 197 CAAAACAAG-TGGAAACAATCACTCTCTCAGATATGAAACAAGAAGAGTTAGAAGCGTTT 255
| |||| || |||| ||| |||| ||||| || |||||||| ||||| || || || |||
Sbjct 197 CTAAAC-AGATGGAGACAGTCACCCTCTCGGAGATGAAACACGAAGAATTGGAGGCTTTT 255
Query 256 GTTGAGTT--TATATACAG-TGATGGCACAATGCT-TTCTGCTA-ACGTGAA-ACAACAT 309
|| ||||| | |||| | ||||||| | || | |||||||| | | || | |||||
Sbjct 256 GTGGAGTTCATCTATAGGGTTGATGGCTCCAT-TTGTTCTGCTAGTC-TCAAGA-AACAT 312
Query 310 GCTCGCTCACTCTATCTTGCGGCTGATAAATACGAGATTATGCATCTTCGAGACCTATGC 369
||||| ||||||| || ||| || || ||||| |||||| |||||| |||||||||||
Sbjct 313 GCTCGTTCACTCTTTCATGCAGCCGACAAATATGAGATTCCGCATCTAAGAGACCTATGC 372
Query 370 AGAACCAAGCTTATATCTTCTCTGAGTTTGTCGAATTCTCTTGA-CCTCCTTGAGCTCGC 428
|||| | |||||||||| ||| ||| || ||||||| ||||| | | |||||||||||||
Sbjct 373 AGAAACGAGCTTATATCATCTTTGAATTCGTCGAATGCTCTT-AGCATCCTTGAGCTCGC 431
Query 429 CCAAATCCCTTTTGACAAAGTCCTTCAC-GATGCAGCCTTTAGTTA-TATCAAAAAGAAT 486
|||||||||||||||||||| ||| || ||| | ||||| | | | ||||| || |||
Sbjct 432 CCAAATCCCTTTTGACAAAGCCCT-CAATGATCCCGCCTTCACT-ACTATCATAACCAAT 489
Query 487 ATAA-TAACGATTGCTAGCTC-TGATGAGTTCAAATTGTTCGTCGCCAGTAACCCAAATC 544
|||| || |||||||||| | |||||||||||| |||| ||||||| | |||||||||
Sbjct 490 ATAAGTA-CGATTGCTAG-TGGTGATGAGTTCAAGCTGTTTGTCGCCAATCACCCAAATC 547
Query 545 TTTCCGTGGAGATAATGAAGGCTTCT 570
|| ||||||| |||||||||||||||
Sbjct 548 TTGCCGTGGATATAATGAAGGCTTCT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5