BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916350
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45475.1 | Symbols: | Potential natural antisense gene, loc... 390 1e-107
AT5G45480.1 | Symbols: | Protein of unknown function (DUF594) ... 390 1e-107
> AT5G45475.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT5G45480 | chr5:18425837-18427016 FORWARD
LENGTH=1054
Length=1054
Score = 390 bits (211), Expect = 1e-107
Identities = 432/532 (81%), Gaps = 41/532 (8%)
Strand=Plus/Minus
Query 440 GACGCAG-AACAGAAAAGAAACGTGAGAAACTTCTACGCTATGTGATGGATATGGATTAT 498
||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 GACCCAGAAACAGAAAAAAAACGTGAGAAACTTCTACGCTATGTGATGGAAATGGATTAC 955
Query 499 GATCAGAGCCTTCTTGTGTGGCATATTGCCACTAAGCTCTTATA-C---C----AAA--C 548
||||||||||||||||| |||||||| |||||| |||||||||| | | ||| |
Sbjct 954 GATCAGAGCCTTCTTGTATGGCATATAGCCACTGAGCTCTTATACCAGACAAAAAAAGGC 895
Query 549 A--AAA--G----A-A--GCCAGTGAATTGAGTAAAATCCTTTCAGACTACATGATTTAC 597
| ||| | | | ||| |||| || ||||||||||| |||||||||||||| ||
Sbjct 894 ACTAAAGCGAATCATAGCGCCCGTGAGTTCAGTAAAATCCTGTCAGACTACATGATGTAT 835
Query 598 CTCCTAATGATGCAACCGAGTCTGATGTCAGCTGTTGTGGGTATTGGAAAGATTAGATTT 657
||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 834 CTCCTAATGATGCAACCCACTCTGATGTCAGCTGTTGTGGGTATTGGAAAGATAAGATTC 775
Query 658 AGAGACACCTACGAGGAGGCTAAAAGGTTATTCGATACGAGGCATATTACACAG-T-T-- 713
|||||||| | |||||||||| | ||||| ||||||| ||||||||| | | | |
Sbjct 774 AGAGACACGTGCGAGGAGGCTCAGAGGTTCTTCGATAGGAGGCATATCATGGGGATATCC 715
Query 714 GTTAAT--GTC-----AT-CAGAGGAAGCTAGCTTTGCAATATTATCTGTATCGGTTCCA 765
| || | | || || ||||||| ||| | ||||| ||||| || | ||||||
Sbjct 714 GCAAAGAAGGCCCCTGATGCAAAGGAAGCCAGCGTGGCAATTTTATCAGTGGCAGTTCCA 655
Query 766 GCAAAAGCTGAGCCTATCGATGTGAAAGAAGACAGAAGCAAGTCTGCCCTCTTTGATGGG 825
|||||||||||||| || || ||||||| ||| |||||||| || | ||| |||||||||
Sbjct 654 GCAAAAGCTGAGCCCATTGACGTGAAAGGAGATAGAAGCAAATCCGTCCTGTTTGATGGG 595
Query 826 GCCATGCTGGCCAAAGAGCTTAAGAGTTTAA-ACA-AA-AACGG-GGACGACACAGAGAT 881
||||||||||| |||||||||||| |||||| | | || || || ||||||| |||||||
Sbjct 594 GCCATGCTGGCGAAAGAGCTTAAGGGTTTAAGAAAGAATAA-GGAGGACGACTCAGAGAT 536
Query 882 GTGGAGGGTAGTGAGTCAAGTGTGGGTTGAGTTGCTTT-GTTATGCAGCGAC 932
||||| || |||| |||||||||||||||||||||| || ||||||||||
Sbjct 535 GTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCTTTCGT-ATGCAGCGAC 485
> AT5G45480.1 | Symbols: | Protein of unknown function (DUF594)
| chr5:18426104-18429090 REVERSE LENGTH=2987
Length=2987
Score = 390 bits (211), Expect = 1e-107
Identities = 432/532 (81%), Gaps = 41/532 (8%)
Strand=Plus/Plus
Query 440 GACGCAG-AACAGAAAAGAAACGTGAGAAACTTCTACGCTATGTGATGGATATGGATTAT 498
||| ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 2115 GACCCAGAAACAGAAAAAAAACGTGAGAAACTTCTACGCTATGTGATGGAAATGGATTAC 2174
Query 499 GATCAGAGCCTTCTTGTGTGGCATATTGCCACTAAGCTCTTATA-C---C----AAA--C 548
||||||||||||||||| |||||||| |||||| |||||||||| | | ||| |
Sbjct 2175 GATCAGAGCCTTCTTGTATGGCATATAGCCACTGAGCTCTTATACCAGACAAAAAAAGGC 2234
Query 549 A--AAA--G----A-A--GCCAGTGAATTGAGTAAAATCCTTTCAGACTACATGATTTAC 597
| ||| | | | ||| |||| || ||||||||||| |||||||||||||| ||
Sbjct 2235 ACTAAAGCGAATCATAGCGCCCGTGAGTTCAGTAAAATCCTGTCAGACTACATGATGTAT 2294
Query 598 CTCCTAATGATGCAACCGAGTCTGATGTCAGCTGTTGTGGGTATTGGAAAGATTAGATTT 657
||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 2295 CTCCTAATGATGCAACCCACTCTGATGTCAGCTGTTGTGGGTATTGGAAAGATAAGATTC 2354
Query 658 AGAGACACCTACGAGGAGGCTAAAAGGTTATTCGATACGAGGCATATTACACAG-T-T-- 713
|||||||| | |||||||||| | ||||| ||||||| ||||||||| | | | |
Sbjct 2355 AGAGACACGTGCGAGGAGGCTCAGAGGTTCTTCGATAGGAGGCATATCATGGGGATATCC 2414
Query 714 GTTAAT--GTC-----AT-CAGAGGAAGCTAGCTTTGCAATATTATCTGTATCGGTTCCA 765
| || | | || || ||||||| ||| | ||||| ||||| || | ||||||
Sbjct 2415 GCAAAGAAGGCCCCTGATGCAAAGGAAGCCAGCGTGGCAATTTTATCAGTGGCAGTTCCA 2474
Query 766 GCAAAAGCTGAGCCTATCGATGTGAAAGAAGACAGAAGCAAGTCTGCCCTCTTTGATGGG 825
|||||||||||||| || || ||||||| ||| |||||||| || | ||| |||||||||
Sbjct 2475 GCAAAAGCTGAGCCCATTGACGTGAAAGGAGATAGAAGCAAATCCGTCCTGTTTGATGGG 2534
Query 826 GCCATGCTGGCCAAAGAGCTTAAGAGTTTAA-ACA-AA-AACGG-GGACGACACAGAGAT 881
||||||||||| |||||||||||| |||||| | | || || || ||||||| |||||||
Sbjct 2535 GCCATGCTGGCGAAAGAGCTTAAGGGTTTAAGAAAGAATAA-GGAGGACGACTCAGAGAT 2593
Query 882 GTGGAGGGTAGTGAGTCAAGTGTGGGTTGAGTTGCTTT-GTTATGCAGCGAC 932
||||| || |||| |||||||||||||||||||||| || ||||||||||
Sbjct 2594 GTGGAAAATAATGAGCCAAGTGTGGGTTGAGTTGCTTTCGT-ATGCAGCGAC 2644
Score = 167 bits (90), Expect = 2e-40
Identities = 123/139 (88%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 4 TATGGTGGATTTGATGTTGGCCTTACTTACGCATTGTTGATAGGAGGAATAACTCTGGAT 63
||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1137 TATAGTGGATTTGATGTTGGCCTTACTTACGCATTGCTGTTAGGAGGAATAGCTCTGGAT 1196
Query 64 TCCATTGCTCTGATCATGTTCTATGCATCTGACTGGACGTATGTCAGATTGAGGACA-AT 122
| ||| ||||| |||||||||| ||||||||| ||||||| |||||||||||||| | ||
Sbjct 1197 TGCATCGCTCTTATCATGTTCTGTGCATCTGATTGGACGTTTGTCAGATTGAGGA-AGAT 1255
Query 123 GAAAGATGAGGTGGATGAT 141
||| || || ||||| |||
Sbjct 1256 GAAGGACGAAGTGGACGAT 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5