BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916352

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64460.2 | Symbols:  | Phosphoglycerate mutase family protei...   481    3e-135


> AT5G64460.2 | Symbols:  | Phosphoglycerate mutase family protein 
| chr5:25772849-25775568 REVERSE LENGTH=1106
Length=1106

 Score =  481 bits (260),  Expect = 3e-135
 Identities = 324/353 (92%), Gaps = 12/353 (3%)
 Strand=Plus/Plus

Query  1    ATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGGGAAACAATTGAAGAACTT  60
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  584  ATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGAAACGATTGAAGAACTT  643

Query  61   GCAGCTAGAGGAAAAAGGTTCCTGAAC---CTATGGACAAGGAAAGAGAAAGAGATAGCG  117
            |||||||||||||||| ||||||||||   ||||||||| ||||||| ||||||||||| 
Sbjct  644  GCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAAAGAAAAAGAGATAGCT  703

Query  118  ATTGTGACACACTGTGGTTTCTTGTTTCACACATTGAATGCACTACAAAACGAGTGTCAT  177
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  704  ATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACTACAAAACGAGTGTCAT  763

Query  178  CCAGATGTTAAGAAGGAAATTTGCAGC---TTTGCGAATTGTGAGCTACATTCAATTGTC  234
            |||||||||||||||||||||||| ||   ||||| ||||||||||||| |||||| |||
Sbjct  764  CCAGATGTTAAGAAGGAAATTTGCGGCCACTTTGCTAATTGTGAGCTACGTTCAATGGTC  823

Query  235  ATCGTTGATAGAA-T--GTTGGGATCAGACACTTCGGTGACTGATTATTCAGGAAAGATT  291
            ||||| ||||||| |  ||||||||| |||| |||||||||||||||| |||||||||||
Sbjct  824  ATCGTCGATAGAAGTATGTTGGGATCGGACAGTTCGGTGACTGATTATCCAGGAAAGATT  883

Query  292  CCAAAGGGGAGTGACCTTCCAAGTGATGCTGTTGTAGATGAGT--CAACATCA  342
            |||||||||| ||| |||||||||||||||||||||||||| |  ||||||||
Sbjct  884  CCAAAGGGGATTGATCTTCCAAGTGATGCTGTTGTAGATGA-TAACAACATCA  935



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5