BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916354 Length=753 Score E Sequences producing significant alignments: (Bits) Value AT1G79690.1 | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog... 195 7e-49 AT5G48530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 171 1e-41 AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | c... 113 2e-24 > AT1G79690.1 | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog 3 | chr1:29985176-29990388 FORWARD LENGTH=2720 Length=2720 Score = 195 bits (105), Expect = 7e-49 Identities = 142/159 (89%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 168 GATTCATGGCCTGGACAATGGGACATCTCTAGTGCTGGCCATATATCAGATGGTGATCCA 227 ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| || Sbjct 353 GATTCTTGGCCTGGTCAATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACA 412 Query 228 TCGCTTTTATCCGCACAGTAAGCGGGAGCTCCAGGAAGAGCTTGGCGTCAAACTCCCAAA 287 |||||| |||| |||||| |||||||| |||||||||||||||| ||||||||||| Sbjct 413 TCGCTTCTATCTGCACAG----CGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAA 468 Query 288 TGATGCATT-GAAAAGATATTCGTTTTTCTACAGGAATG 325 |||||||| |||||||| ||||||||||| |||||||| Sbjct 469 GGATGCATTTGAAAAGATCTTCGTTTTTCTGCAGGAATG 507 > AT5G48530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07440.1); Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:19666837-19668830 REVERSE LENGTH=1203 Length=1203 Score = 171 bits (92), Expect = 1e-41 Identities = 111/120 (93%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 636 aaaagaaaaaga-aggaaaaTCCTTTGCACCAATGAACACCGCAGCACCAGACTCTAGAG 694 ||| || || || || |||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 639 AAAGGAGAATGAGAGAAAAAGCCTTTGCACCAATGAACGCCGCAGCACCAGACTCTAGAG 698 Query 695 ACTTGAATTGGAATGCACAGAGACAGTCATTTGATGCTGAGAGATACACTCGGG-ATTGA 753 |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 699 ACTTGAATTGGAATGCACAGAGACAGCCATTTGATGCTGAGAGATACACTCGGGGATTGA 758 > AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275677-5277689 REVERSE LENGTH=1588 Length=1588 Score = 113 bits (61), Expect = 2e-24 Identities = 87/99 (88%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 410 TCTTCAACTCCTCCAACAATCTCAGTCTTCTTCTCCAACTCAGAGGTATCCACTTCCATG 469 |||||| ||||| | || || ||| |||||||||||||||||||||||||||||||||| Sbjct 916 TCTTCAGCTCCTTCTCCACTCCCAGCCTTCTTCTCCAACTCAGAGGTATCCACTTCCATG 857 Query 470 GACTCTTTCTTGTC-CGTCACAACTTCTCATCCTCTTTG 507 |||||||||||||| | ||||||||||| |||||||| Sbjct 856 GACTCTTTCTTGTCTC-TCACAACTTCTG--CCTCTTTG 821 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36570459016 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5