BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916354

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79690.1 | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog...   195    7e-49
  AT5G48530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   171    1e-41
  AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | c...   113    2e-24


> AT1G79690.1 | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog 
3 | chr1:29985176-29990388 FORWARD LENGTH=2720
Length=2720

 Score =  195 bits (105),  Expect = 7e-49
 Identities = 142/159 (89%), Gaps = 5/159 (3%)
 Strand=Plus/Plus

Query  168  GATTCATGGCCTGGACAATGGGACATCTCTAGTGCTGGCCATATATCAGATGGTGATCCA  227
            ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  353  GATTCTTGGCCTGGTCAATGGGACATCTCTAGTGCTGGCCATATATCAGCTGGTGATACA  412

Query  228  TCGCTTTTATCCGCACAGTAAGCGGGAGCTCCAGGAAGAGCTTGGCGTCAAACTCCCAAA  287
            |||||| |||| ||||||    ||||||||  |||||||||||||||| |||||||||||
Sbjct  413  TCGCTTCTATCTGCACAG----CGGGAGCTTGAGGAAGAGCTTGGCGTAAAACTCCCAAA  468

Query  288  TGATGCATT-GAAAAGATATTCGTTTTTCTACAGGAATG  325
             |||||||| |||||||| ||||||||||| ||||||||
Sbjct  469  GGATGCATTTGAAAAGATCTTCGTTTTTCTGCAGGAATG  507


> AT5G48530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT3G07440.1); Has 32 Blast 
hits to 32 proteins in 11 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr5:19666837-19668830 
REVERSE LENGTH=1203
Length=1203

 Score =  171 bits (92),  Expect = 1e-41
 Identities = 111/120 (93%), Gaps = 2/120 (2%)
 Strand=Plus/Plus

Query  636  aaaagaaaaaga-aggaaaaTCCTTTGCACCAATGAACACCGCAGCACCAGACTCTAGAG  694
            ||| || || || || |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  639  AAAGGAGAATGAGAGAAAAAGCCTTTGCACCAATGAACGCCGCAGCACCAGACTCTAGAG  698

Query  695  ACTTGAATTGGAATGCACAGAGACAGTCATTTGATGCTGAGAGATACACTCGGG-ATTGA  753
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct  699  ACTTGAATTGGAATGCACAGAGACAGCCATTTGATGCTGAGAGATACACTCGGGGATTGA  758


> AT1G15340.1 | Symbols: MBD10 | methyl-CPG-binding domain 10 | 
chr1:5275677-5277689 REVERSE LENGTH=1588
Length=1588

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 87/99 (88%), Gaps = 4/99 (4%)
 Strand=Plus/Minus

Query  410  TCTTCAACTCCTCCAACAATCTCAGTCTTCTTCTCCAACTCAGAGGTATCCACTTCCATG  469
            |||||| ||||| |  || || ||| ||||||||||||||||||||||||||||||||||
Sbjct  916  TCTTCAGCTCCTTCTCCACTCCCAGCCTTCTTCTCCAACTCAGAGGTATCCACTTCCATG  857

Query  470  GACTCTTTCTTGTC-CGTCACAACTTCTCATCCTCTTTG  507
            |||||||||||||| | |||||||||||   ||||||||
Sbjct  856  GACTCTTTCTTGTCTC-TCACAACTTCTG--CCTCTTTG  821



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36570459016


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5