BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916356
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01750.2 | Symbols: | Protein of unknown function (DUF567) ... 490 4e-138
> AT5G01750.2 | Symbols: | Protein of unknown function (DUF567)
| chr5:289765-291326 FORWARD LENGTH=1140
Length=1140
Score = 490 bits (265), Expect = 4e-138
Identities = 399/456 (88%), Gaps = 39/456 (9%)
Strand=Plus/Plus
Query 1 GTGAAGGAACCGGTGTTTGGTCTTCACGACAAGAGGATCTTGCTGGATGGTTCTGGTAAT 60
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
Sbjct 468 GTGAAGGAACCGGTGTTTGGTCTCCACGACAAGAGGGTCTTGCTGGATGGTTCTGGTACT 527
Query 61 CCGATCGTGACTTTGAGAG--AA-A-----AG-AT-CA-G--A--TGGCAAGTGTTTAGA 105
||| |||| |||||||||| || | || || || | | |||||||||||||||
Sbjct 528 CCGGTCGTCACTTTGAGAGAAAAGATGGTGAGCATGCATGACAGGTGGCAAGTGTTTAGA 587
Query 106 GGAGGGAGCACGGAGCAGCGTGATCTGCTTTACACGGTGAAAAGATCGTCGATGCTTCAG 165
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 588 GGAGGGAGTACGGATCAGCGTGATCTGCTGTACACGGTGAAAAGATCGTCGATGCTTCAG 647
Query 166 CTAAAGACAAAACTTGATGTGTTTTTGGGGCACAACAAAGATGAGAAAAGATGTGATTTC 225
|||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 648 CTAAAGACCAAACTCGATGTGTTTTTGGGACACAACAAAGATGAGAAGAGATGTGATTTC 707
Query 226 AGAGTCAAAGGGAGTTGGCTCGAGCATTCTTGTGTTGTTTTCGCCGGCGAATCTGACGCC 285
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 708 AGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTGTTGTTTACGCCGGCGAATCTGACGCC 767
Query 286 ATTGTTGCCCAAA-GC---G-----------T--A-----T-T-CTTGGGAAAAGACAAT 321
||||||||||||| || | | | | | |||||||||||||||
Sbjct 768 ATTGTTGCCCAAATGCACAGGAAGCACACGGTGCAGAGCGTATTCTTGGGAAAAGACAAC 827
Query 322 TTCTCAGTGACTGTTTATCCAAACGTCGATTATGCCTTCATCGCCTCTCTCGTCGTCATT 381
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTCTCGGTGACTGTTTATCCAAACGTCGATTATGCCTTCATCGCCTCTCTCGTCGTCATT 887
Query 382 CTCGATGACGTCAACCGTGAAGACCGCACCGCCTGA 417
||||||||||||||||| ||||||||| ||||||||
Sbjct 888 CTCGATGACGTCAACCGCGAAGACCGCGCCGCCTGA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19755225357
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5