BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916358

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48543.1 | Symbols: LCR1 | low-molecular-weight cysteine-ric...   250    5e-66


> AT5G48543.1 | Symbols: LCR1 | low-molecular-weight cysteine-rich 
1 | chr5:19674392-19675292 FORWARD LENGTH=270
Length=270

 Score =  250 bits (135),  Expect = 5e-66
 Identities = 149/156 (96%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  115  GTTAACCCAAAAACTGGATTGTGTGTTCTCAAAGATTGTGAGTCTCTGTGTAAGAAGAGG  174
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  
Sbjct  115  GTTAACCCAAAAACTGGATTGTGTGTTCTCAAAGATTGTGAGTCTGTGTGTAAGAAGACA  174

Query  175  AGTAAAGGGTTAGAGGGTATTTGCTGGAAGTTTAATGCCCAAGGAAAAGACCCTAAACAA  234
            ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct  175  AGTAAAGGGTTAGAGGGTATTTGCTGGAAGTTTAATGCCAAAGGAAAAGATCCTAAGCAA  234

Query  235  TGCAAATGTTGTGGTTTATGGCCTCCTCTTTACTAA  270
            |||||||||||||||||||||||||| |||||||||
Sbjct  235  TGCAAATGTTGTGGTTTATGGCCTCCACTTTACTAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5