BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916364

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28810.1 | Symbols:  | Protein of unknown function (DUF1216)...   180    1e-44
  AT3G28820.1 | Symbols:  | Protein of unknown function (DUF1216)...   180    1e-44


> AT3G28810.1 | Symbols:  | Protein of unknown function (DUF1216) 
| chr3:10822471-10823941 REVERSE LENGTH=1305
Length=1305

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 215/270 (80%), Gaps = 16/270 (6%)
 Strand=Plus/Plus

Query  1    ATGGAAATCATAAATACCTTTAAATTTACGAGATCTGTGGCGGGTAAGATTATAGGCGGT  60
            |||||| | || ||||||||||| |||| ||||| | | |||  ||| ||| | ||  | 
Sbjct  379  ATGGAAGTTATTAATACCTTTAAGTTTATGAGATTTCTTGCGACTAAAATTGTGGGAAGC  438

Query  61   CGCAAGAAA-GAGGAGGGCGAAGAATCGATGAAGCTAACAACTCAACAACAAAAAGAAAT  119
            ||||| ||| |||||| |||| ||||| |||||||||||| |  ||||||||||||||||
Sbjct  439  CGCAA-AAAGGAGGAGAGCGAGGAATCAATGAAGCTAACAGCAGAACAACAAAAAGAAAT  497

Query  120  CAAAGAAGGGATCTTAAAATGGGAGACAGTGATTACTCGGATCACAAACACAATTGT-T-  177
            ||||||||||||||||| |||||| ||| | ||||||||||||||||||||||| || | 
Sbjct  498  CAAAGAAGGGATCTTAAGATGGGAAACAATCATTACTCGGATCACAAACACAATGGTATC  557

Query  178  GTAAGCACAACAAACTCT--T-CTTC-AATGGAAAATTCTACGAGAAGAAAAAGAAG-TT  232
            | | ||||||| ||||||  | |||| |||| || | |||| | |  |  ||||||| ||
Sbjct  558  G-A-GCACAACCAACTCTGCTTCTTCCAATG-AAGAGTCTA-GTGTTGGGAAAGAAGCTT  613

Query  233  CTAGCGGTAGTATTAGCAAAAGCTCTGGTA  262
            | ||||  |  |  ||||||||||||||||
Sbjct  614  CCAGCGAAA--AC-AGCAAAAGCTCTGGTA  640


> AT3G28820.1 | Symbols:  | Protein of unknown function (DUF1216) 
| chr3:10827647-10829396 FORWARD LENGTH=1372
Length=1372

 Score =  180 bits (97),  Expect = 1e-44
 Identities = 215/270 (80%), Gaps = 16/270 (6%)
 Strand=Plus/Plus

Query  1    ATGGAAATCATAAATACCTTTAAATTTACGAGATCTGTGGCGGGTAAGATTATAGGCGGT  60
            |||||| | || ||||||||||| |||| ||||| | | |||  ||| ||| | ||  | 
Sbjct  446  ATGGAAGTTATTAATACCTTTAAGTTTATGAGATTTCTTGCGACTAAAATTGTGGGAAGC  505

Query  61   CGCAAGAAA-GAGGAGGGCGAAGAATCGATGAAGCTAACAACTCAACAACAAAAAGAAAT  119
            ||||| ||| |||||| |||| ||||| |||||||||||| |  ||||||||||||||||
Sbjct  506  CGCAA-AAAGGAGGAGAGCGAGGAATCAATGAAGCTAACAGCAGAACAACAAAAAGAAAT  564

Query  120  CAAAGAAGGGATCTTAAAATGGGAGACAGTGATTACTCGGATCACAAACACAATTGT-T-  177
            ||||||||||||||||| |||||| ||| | ||||||||||||||||||||||| || | 
Sbjct  565  CAAAGAAGGGATCTTAAGATGGGAAACAATCATTACTCGGATCACAAACACAATGGTATC  624

Query  178  GTAAGCACAACAAACTCT--T-CTTC-AATGGAAAATTCTACGAGAAGAAAAAGAAG-TT  232
            | | ||||||| ||||||  | |||| |||| || | |||| | |  |  ||||||| ||
Sbjct  625  G-A-GCACAACCAACTCTGCTTCTTCCAATG-AAGAGTCTA-GTGTTGGGAAAGAAGCTT  680

Query  233  CTAGCGGTAGTATTAGCAAAAGCTCTGGTA  262
            | ||||  |  |  ||||||||||||||||
Sbjct  681  CCAGCGAAA--AC-AGCAAAAGCTCTGGTA  707



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5