BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916368
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48620.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 965 0.0
AT5G43470.1 | Symbols: RPP8, HRT, RCY1 | Disease resistance pro... 965 0.0
AT5G35450.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 926 0.0
AT1G10920.1 | Symbols: LOV1 | NB-ARC domain-containing disease ... 782 0.0
AT5G11330.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 97.1 2e-19
> AT5G48620.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:19716476-19721452 FORWARD LENGTH=3790
Length=3790
Score = 965 bits (522), Expect = 0.0
Identities = 670/741 (90%), Gaps = 12/741 (2%)
Strand=Plus/Plus
Query 103 GATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTT 162
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 688 GATGCCAAGAAACATGGAAGTGATAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTT 747
Query 163 GTTTATGATGCAGAGGATATACTTGAATCCTATGTTCTGAACAAAAGTAGAGCTA-AAGA 221
|||| |||||| ||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 748 GTTTTTGATGCTGAGGATATAATTGAATCCTATGTTCTGAACAAACTTAGAG-GAGAAGG 806
Query 222 AAAAGGAATCAAGAAGCATGTGAGAAGACTTGCTTGCTTCTTAACGGATCGCCGCAAAGT 281
|||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||
Sbjct 807 AAAAGGGGTCAAGAAGCATGTGAGACGACTTGCTCGCTTCTTAACGGATCGCCACAAAGT 866
Query 282 TGCTTCAGAAATCGAAGGAATCACTAAGAGGATCTCTGAGGTGATTGGGGATATGCAGAG 341
||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||||||
Sbjct 867 TGCTTCAGATATCGAGGGTATAACTAAGAGGATCTCTGATGTGATTGGGGAGATGCAGAG 926
Query 342 TTTAGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGACAGACAAAG 401
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 927 TTTTGGGATACAACAAATCATTGATGGTGTTCGTTCGCTGTCTCTTCAGGAAAGACAAAG 986
Query 402 GGAGCAGAGGGAGATCCGACAAACGT-TCGCTAAAAGTCCTGACCA-CGATCTTGTTGGG 459
|| ||||||||||||||||||||||| || || | ||| |||| | ||||||||| |||
Sbjct 987 GGTGCAGAGGGAGATCCGACAAACGTATC-CTGACAGTTCTGA-AAGCGATCTTGTCGGG 1044
Query 460 GTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATAAAAT-TCAAGT 518
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1045 GTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGAT-ATTTATCAAGT 1103
Query 519 GGTTTCTATATCTGGGATGGGCGGTATTGGTAAAAGCACTCTGGCCAGACAAGTTTTTCA 578
|||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 1104 GGTTTCTATAGCTGGGATGGGCGGTATTGGTAAAACCACTCTGGCTAGACAAGTCTTTCA 1163
Query 579 TCATGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTATGTTTCGCAACAGTT 638
|||||| ||||||| ||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 1164 TCATGATTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTCGCAACAATT 1223
Query 639 TACTCAGACATATGTTTGGCAGAGGATCCTGCAAGAACTTCGGCCACACGATGGTG-AGA 697
||| | || | ||||||||||||||||| |||||||||||| |||||| ||||| | | |
Sbjct 1224 TACACTGAAACATGTTTGGCAGAGGATCTTGCAAGAACTTCAGCCACATGATGG-GAATA 1282
Query 698 TATTGCAGATGGACGAATATGCACTCCAGGGTAAACTCTTTCAATTGTT-GCAAACCGGT 756
| || ||||||||||||| |||||| ||| |||||||||||||||||| | | ||||||
Sbjct 1283 TTTTACAGATGGACGAATCTGCACTTCAGCCTAAACTCTTTCAATTGTTAG-AGACCGGT 1341
Query 757 AGATATTTGGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAAGCA 816
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AGATATTTACTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAAGCA 1401
Query 817 GTGTTTCCACAGCAAAGAGGT 837
|||||||||| | ||||||||
Sbjct 1402 GTGTTTCCACGGAAAAGAGGT 1422
> AT5G43470.1 | Symbols: RPP8, HRT, RCY1 | Disease resistance protein
(CC-NBS-LRR class) family | chr5:17462611-17467448 REVERSE
LENGTH=3310
Length=3310
Score = 965 bits (522), Expect = 0.0
Identities = 669/740 (90%), Gaps = 10/740 (1%)
Strand=Plus/Plus
Query 103 GATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTT 162
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 332 GATGCCAAGAAACATGGAAGTGATAGGGTGAGGAATTTCTTGGAAGATGTCAAAGACCTT 391
Query 163 GTTTATGATGCAGAGGATATACTTGAATCCTATGTTCTGAACAAAAGTAGAGCTAAAGAA 222
|||| |||||| ||||||||| ||||||||||||||||||||||| ||| | |||| |
Sbjct 392 GTTTTTGATGCTGAGGATATAATTGAATCCTATGTTCTGAACAAACTTAGTGGAAAAGGA 451
Query 223 AAAGGAATCAAGAAGCATGTGAGAAGACTTGCTTGCTTCTTAACGGATCGCCGCAAAGTT 282
||||| ||||||||||||||||| |||||||||||||||| |||||||||| ||| |||
Sbjct 452 AAAGGGGTCAAGAAGCATGTGAGACGACTTGCTTGCTTCTTGACGGATCGCCACAAGGTT 511
Query 283 GCTTCAGAAATCGAAGGAATCACTAAGAGGATCTCTGAGGTGATTGGGGATATGCAGAGT 342
|||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 512 GCTTCAGATATCGAGGGTATCACTAAGAGGATCTCTGAAGTGATTGGGGAAATGCAGAGT 571
Query 343 TTAGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGACAGACAAAGG 402
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 572 TTTGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGAAAGACAAAGG 631
Query 403 GAGCAGAGGGAGATCCGACAAACGT-TCGCTAAAAGTCCTGACCA-CGATCTTGTTGGGG 460
| ||||||||||||||||||||||| || || | ||| |||| | ||||||||| ||||
Sbjct 632 GTGCAGAGGGAGATCCGACAAACGTATC-CTGACAGTTCTGAA-AGCGATCTTGTCGGGG 689
Query 461 TGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATAAA-ATTCAAGTG 519
|||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 690 TGGAGCAGAGTGTTAAAGAATTGGTTGGTCATTTGGTGGAGAATGATGTTCAT-CAAGTG 748
Query 520 GTTTCTATATCTGGGATGGGCGGTATTGGTAAAAGCACTCTGGCCAGACAAGTTTTTCAT 579
||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct 749 GTTTCTATAGCTGGGATGGGCGGTATTGGTAAAACCACTCTGGCTAGACAAGTCTTTCAT 808
Query 580 CATGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTATGTTTCGCAACAGTTT 639
|||||| ||||||| ||||| |||||||||||||||||||||| |||||| ||||| |||
Sbjct 809 CATGACTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTCCCAACAATTT 868
Query 640 ACTCAGACATATGTTTGGCAGAGGATCCTGCAAGAACTTCGGCCACACGATGGTGAGATA 699
|| |||| | ||||||||||||||||| |||||||||||| |||||| ||||| || ||
Sbjct 869 ACACAGAAACATGTTTGGCAGAGGATCTTGCAAGAACTTCAGCCACATGATGGGGATATT 928
Query 700 TTGCAGATGGACGAATATGCACTCCAGGGTAAACTCTTTCAATTGTT-GCAAACCGGTAG 758
|| |||||||||||||||||||| ||| ||||||||||||||||||| | | |||||||
Sbjct 929 TTACAGATGGACGAATATGCACTTCAGCGTAAACTCTTTCAATTGTTAG-AGGCCGGTAG 987
Query 759 ATATTTGGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCG-AATAAAAGCAG 817
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 988 ATATTTAGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGAT-GTAATAAAAGCAG 1046
Query 818 TGTTTCCACAGCAAAGAGGT 837
||||||||| | ||||||||
Sbjct 1047 TGTTTCCACGGAAAAGAGGT 1066
> AT5G35450.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:13667686-13671184 FORWARD LENGTH=3231
Length=3231
Score = 926 bits (501), Expect = 0.0
Identities = 667/744 (90%), Gaps = 24/744 (3%)
Strand=Plus/Plus
Query 103 GATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTT 162
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 268 GATGCAAAGAAACATGGAAGTGATAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTT 327
Query 163 GTTTATGATGCAGAGGATATACTTGAATCCTATGTTCTGAACAAAAGTAGAGCTA-AAGA 221
|||| |||||| ||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 328 GTTTTTGATGCTGAGGATATAATTGAATCCTATGTTCTGAACAAACTTAGAG-GAGAAGG 386
Query 222 AAAAGGAATCAAGAAGCATGTGAGAAGACTTGCTTGCTTCTTAACGGATCGCCGCAAAGT 281
|||||| ||||||| ||||||||| |||||||||||||||| |||||||||| ||| ||
Sbjct 387 AAAAGGGGTCAAGAATCATGTGAGACGACTTGCTTGCTTCTTGACGGATCGCCACAAGGT 446
Query 282 TGCTTCAGAAATCGAAGGAATCACTAAGAGGATCTCTGAGGTGATTGGGGATATGCAGAG 341
||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 447 TGCTTCAGATATCGAGGGTATCACTAAAAGGATCTCTAAGGTGATTGGGGAAATGCAGAG 506
Query 342 TTTAGGGAT---ACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGACAGACA 398
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 507 TTTAGGGATACAACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCA-G---GAC- 561
Query 399 AAGGGAGCAGAGGGAGATCCGACAAACG-TTCGCTAAAAGTC-CTGACCA-CGATCTTGT 455
| | |||||||||||||| |||||| ||| |||| || | |||| | |||||||||
Sbjct 562 -A--TA-CAGAGGGAGATCCGGCAAACGTTTC-CTAACAG-CTCTGA-AAGCGATCTTGT 614
Query 456 TGGGGTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAA-TGATAAAATTC 514
||||||||||| |||||||||||||||||||||| | ||||||| || |||||| ||||
Sbjct 615 CGGGGTGGAGCAAAGTGTTGAAGAATTGGTTGGTCCTATGGTGGA-AATTGATAACATTC 673
Query 515 AAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAAGCACTCTGGCCAGACAAGTTT 574
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 674 AAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAACCACTTTGGCCAGACAAATCT 733
Query 575 TTCATCATGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTATGTTTCGCAAC 634
|||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 734 TTCATCATGATTTAGTCCGGCGTCATTTTGATGGATTCGCATGGGTCTGTGTTTCGCAAC 793
Query 635 AGTTTACTCAGACAT-ATGTTTGGCAGAGGATCCTGCAAGAACTTCGGCCACACGATGGT 693
| |||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 794 AATTTACTCAGA-AGCATGTTTGGCAGAGAATCTTGCAAGAACTTCGGCCACACGATGGT 852
Query 694 GAGATATTGCAGATGGACGAATATGCACTCCAGGGTAAACTCTTTCAATTGTTGCAAACC 753
||||| || ||||||||||||||| || ||||||||||||||||||| |||||| |||||
Sbjct 853 GAGATCTTACAGATGGACGAATATACAATCCAGGGTAAACTCTTTCAGTTGTTGGAAACC 912
Query 754 GGTAGATATTTGGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAA 813
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 913 GGTAGATATTTGGTTGTCCTCGATGATGTATGGAAAGAAGAAGACTGGGATCGAATAAAA 972
Query 814 GCAGTGTTTCCACAGCAAAGAGGT 837
| ||||||||||| | ||||||||
Sbjct 973 GAAGTGTTTCCACGGAAAAGAGGT 996
> AT1G10920.1 | Symbols: LOV1 | NB-ARC domain-containing disease
resistance protein | chr1:3644420-3647768 REVERSE LENGTH=2847
Length=2847
Score = 782 bits (423), Expect = 0.0
Identities = 640/744 (86%), Gaps = 18/744 (2%)
Strand=Plus/Plus
Query 103 GATGCCAAGAAACATGGAAGTGAAAGGGTGAGGAAC-TTCTTGGAAGATGTCAAAGACCT 161
|||||||||||||||| ||||||||||||||| ||| ||| |||||||||||| ||| |
Sbjct 266 GATGCCAAGAAACATGAAAGTGAAAGGGTGAGAAACTTTC-TGGAAGATGTCAGGGACAT 324
Query 162 TGTTTATGATGCAGAGGATATACTTGAATCCTATGTTCTGAACAAAAGTAGAGCTAAAGA 221
|||||||||||| ||||||||| | ||||||| | |||||||| || |||| | |||||
Sbjct 325 TGTTTATGATGCTGAGGATATAATCGAATCCTTTCTTCTGAACGAATTTAGAACAAAAGA 384
Query 222 AAAAGGAATCAAGAAGCATGTGAGAAGACTTGCTTGCTTCTTAACGGATCGCCGCAAAGT 281
|||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||| |
Sbjct 385 AAAAGGGATCAAGAAGCATGCGAGAAGACTTGCTTGCTTCTTAGTGGATCGCCGGAAATT 444
Query 282 TGCTTCAGAAATCGAAGGAATCACTAAGAGGATCTCTGAGGTGATT-GGGGATATGCAGA 340
||||||||| ||| |||| || ||| ||| ||| || ||||||||| ||||| ||| |||
Sbjct 445 TGCTTCAGATATCAAAGGCATAACTTAGAAGATTTCCGAGGTGATTGGGGGA-ATGAAGA 503
Query 341 GTTTAGGGATACAACAAATCATTGATGGTGGTCGTTCGCTGTCTCTTCAGGACAGACAAA 400
||||||| |||||| | || || ||||||| | ||||| |||| || || || |||||||
Sbjct 504 GTTTAGGAATACAAGAGATTATCGATGGTGCTAGTTCGATGTCGCTGCAAGAAAGACAAA 563
Query 401 GGGAGCAGAGGGAGATCCGACAAACGTTCGCTAAAAGTCCTGACCA-CGATCTTGTTGGG 459
||||||| | ||||||||| |||||||| ||||| ||| |||| | ||| ||||| |||
Sbjct 564 GGGAGCAAAAGGAGATCCGGCAAACGTTTGCTAACAGTTCTGA-AAGCGACCTTGTGGGG 622
Query 460 GTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATAAAATTCAAGTG 519
||||| ||||||||||||| ||||| |||||| ||||||||||||||||| |||||||||
Sbjct 623 GTGGAACAGAGTGTTGAAGCATTGGCTGGTCACTTGGTGGAGAATGATAACATTCAAGTG 682
Query 520 GTTTCTATATCTGGGATGGGCGGTATTGGTAAAAGCACTCTGGCCAGACAAGTTTTTCAT 579
|||||||||||||||||||| ||||||||||||| |||||| || |||||||| ||||||
Sbjct 683 GTTTCTATATCTGGGATGGGTGGTATTGGTAAAACCACTCTCGCAAGACAAGTCTTTCAT 742
Query 580 CATGACATAGTCCGACGTCATTTTGATGGATTCGCATGGGTCTATGTTTCGCAACAGTTT 639
|||||||| || | ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 743 CATGACATGGTACAACGCCATTTTGATGGATTCGCATGGGTCTTTGTTTCGCAACAGTTT 802
Query 640 ACTCAGACAT-ATGTTTGGCAGAGGATCCTG-CAAGAACTTCGGCCACACGATGGTGAGA 697
|| |||| | ||||||||||||||||| || |||||||||| ||||| |||| || |
Sbjct 803 ACGCAGA-AGCATGTTTGGCAGAGGATC-TGGCAAGAACTTCAACCACAAAATGGGGACA 860
Query 698 TATTG-CAGATGGACGA--ATATGCACTCCAGGGTAAACTCTTTCAATTGTT-GCAAACC 753
| || || |||||||| |||| ||||||||||||||||||| ||||||| | |||||
Sbjct 861 T-TTCACATATGGACGAGCATAT--ACTCCAGGGTAAACTCTTTAAATTGTTAG-AAACC 916
Query 754 GGTAGATATTTGGTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAA 813
||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||| |||
Sbjct 917 GGTAGATATTTGGTTGTTCTTGATGACGTATGGAAAGAAGAAGACTGGGACCGAATTAAA 976
Query 814 GCAGTGTTTCCACAGCAAAGAGGT 837
||||||||||| | | ||||||||
Sbjct 977 GCAGTGTTTCCGCGGAAAAGAGGT 1000
> AT5G11330.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:3617215-3618897 REVERSE LENGTH=1390
Length=1390
Score = 97.1 bits (52), Expect = 2e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 49 AACAGACTCATAGCGTGTTTTACGAGCTTTTTAACAAGAAACTCAATTGGATTTG 103
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 710 AACAGACTCATAGCGTGTTTTACGAGCTTTTTAACAAGAAACTCAACTGGATTTG 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5