BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916376

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61330.1 | Symbols:  | FBD, F-box and Leucine Rich Repeat do...   115    2e-25
  AT1G61320.1 | Symbols:  | FBD / Leucine Rich Repeat domains con...   115    2e-25


> AT1G61330.1 | Symbols:  | FBD, F-box and Leucine Rich Repeat 
domains containing protein | chr1:22622975-22624527 FORWARD 
LENGTH=1344
Length=1344

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 87/99 (88%), Gaps = 2/99 (2%)
 Strand=Plus/Minus

Query  32    AGAGATGGTGTATTCTTCACAAAGAACTCTACTATATCAAGCTCATGCCTA-TAGCCTTT  90
             ||||||||||  ||||| ||||||||||||||||||||||||||||||| | | ||||||
Sbjct  1226  AGAGATGGTGCGTTCTTGACAAAGAACTCTACTATATCAAGCTCATGCC-AGTGGCCTTT  1168

Query  91    ATAGCCAATGATTTTGACTTCATTGAGAAACTTCAAAAG  129
             |||||||||||| || || ||  ||||| ||||||||||
Sbjct  1167  ATAGCCAATGATCTTCACGTCCGTGAGACACTTCAAAAG  1129


> AT1G61320.1 | Symbols:  | FBD / Leucine Rich Repeat domains containing 
protein | chr1:22617370-22619853 FORWARD LENGTH=1515
Length=1515

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 87/99 (88%), Gaps = 2/99 (2%)
 Strand=Plus/Minus

Query  32    AGAGATGGTGTATTCTTCACAAAGAACTCTACTATATCAAGCTCATGCCTA-TAGCCTTT  90
             ||||||||||  ||||| ||||||||||||||||||||||||||||||| | | ||||||
Sbjct  1262  AGAGATGGTGCGTTCTTGACAAAGAACTCTACTATATCAAGCTCATGCC-AGTGGCCTTT  1204

Query  91    ATAGCCAATGATTTTGACTTCATTGAGAAACTTCAAAAG  129
             |||||||||||| || || ||  ||||| ||||||||||
Sbjct  1203  ATAGCCAATGATCTTCACGTCCGTGAGACACTTCAAAAG  1165



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5