BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916386

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36922.1 | Symbols:  | unknown protein. | chr1:13984576-1398...   204    5e-52


> AT1G36922.1 | Symbols:  | unknown protein. | chr1:13984576-13985290 
FORWARD LENGTH=503
Length=503

 Score =  204 bits (110),  Expect = 5e-52
 Identities = 128/137 (93%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  167  AGGCTGAAATTAACTTTGTTGATGTGGAAAAATTAGACAACAATGAAGACAACGCTTATA  226
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| 
Sbjct  364  AGGCTGAAATTAACTTTGTTGATGTGGATAACTTAGACAACAATGAAGACAACGCTTATT  423

Query  227  ACGTTTCCACTCCAAAGCCTACAACTAAAAGATCCTTGGCAACATCTAAAGATGTTCAAC  286
            || ||||||| |||||||||| |||||||||||  ||||||||||||||| |||||||||
Sbjct  424  ACATTTCCACGCCAAAGCCTATAACTAAAAGATTTTTGGCAACATCTAAACATGTTCAAC  483

Query  287  AATCATCAACGAAGCCT  303
            |||||||||||||||||
Sbjct  484  AATCATCAACGAAGCCT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15985144182


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5