BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916391

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23370.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   134    7e-31


> AT3G23370.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr3:8357585-8360865 FORWARD LENGTH=2537
Length=2537

 Score =  134 bits (72),  Expect = 7e-31
 Identities = 88/96 (92%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  36   AGGTTTTGTACCTTTGACGAGGAGGTGGTTATCTTCTTCTCTTGAGGATGGTCGGAAATA  95
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  82   AGGTTTTGTAATTTTGACGAGGAGGTGGTTATCTTCTTCTCTTGAGGATGGTCGGAAATG  141

Query  96   TGAGAGATTGCCAAATTCCAAAACTTCCACGAACAA  131
            |||||||||| || ||||  || |||||||||||||
Sbjct  142  TGAGAGATTGTCAGATTCTGAAGCTTCCACGAACAA  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5