BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916395
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase tran... 835 0.0
> AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr5:19770052-19770819
REVERSE LENGTH=768
Length=768
Score = 835 bits (452), Expect = 0.0
Identities = 655/754 (87%), Gaps = 10/754 (1%)
Strand=Plus/Plus
Query 6 GTCTTC-ACGAACCT-TTGTAGTGGTTTTGTGTTTTCTGTTCGTAATCGCTCCATACTTC 63
|||||| | ||| || || | |||| |||||||||||||||||| | ||||||| |||
Sbjct 9 GTCTTCGA-GAA-CTATTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTT 66
Query 64 ACTAGAGCAACAACCGATGGAGTTCGTGCTAGATGTGACTCTAAACAA-TTTAGGAACGG 122
||||||||||||||| ||| ||||| | ||| || |||||| |||| || | || ||
Sbjct 67 ACTAGAGCAACAACCAATGAAGTTCAAGTTAGCTGCGACTCT-CACAACTTCAACAATGG 125
Query 123 CAAACACTTCCGATCTTGCATTGACCTTCCGGTGTTAGACTCCTATCTACACTTCAGTTA 182
|||||||||||| || || |||||||||| |||||||| || | |||||||| ||||||
Sbjct 126 CAAACACTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTA 185
Query 183 TGTTCGAGAAAGCGGAGTACTTGATGTTGCGTATCGTCACACCAACGTCGAGAGTTCTAG 242
|||||||||| |||||| ||||| ||||| |||||||| |||||| ||||| ||||||
Sbjct 186 CGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAG 245
Query 243 TTGGATTGCTTGGGGCATAAACCCGACGAGTAAAGGCATGTTAGGTGCTCAAACTCTCTT 302
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||
Sbjct 246 TTGGATTGCTTGGGGCATAAACCCGACGAGCAAAGGCATGATAGGTGCTCAAACACTTTT 305
Query 303 GGCTTACCGTAACTCTTCGTCTGGTTTTATGCGTGCCTATACTTCCTCAATTAA-GGACT 361
||||||||||||||| |||| |||||||||||||| |||||||||||||| || || ||
Sbjct 306 GGCTTACCGTAACTCCACGTCCGGTTTTATGCGTGCATATACTTCCTCAATAAATGG-CT 364
Query 362 ATTCAACTACGCTTCAAGAAGGACCTCTCAGCTTTCACGTAAAACAACTTTCCGCTGAAT 421
| || ||| |||||||||||| ||||| ||||||| |||| ||||| ||||||||||
Sbjct 365 ACACACCTATGCTTCAAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAAT 424
Query 422 TTCTCAATGGAGAGATGACTATATTCGCCACTATAGTCTTGCC-TACTAACACAACAGTC 480
||||||| |||||||||||||||| |||||||| || | ||| | |||||||||| ||
Sbjct 425 ATCTCAATAGAGAGATGACTATATTTGCCACTATGGTGTGGCCGT-CTAACACAACCGTT 483
Query 481 GTAAATCATTTATGGCAAGACGGTCCGCTGAAAGAAGGTGATAGACTTGGGATGCATGCT 540
|| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||
Sbjct 484 GTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCC 543
Query 541 ATGAATAGAGATCATCTCAAATCCATGGCTACTTTGGACTTGTTGTCCGGACAATTCACG 600
|||| | || ||||||||||||||||||||| |||||| ||||||||||||||| ||| |
Sbjct 544 ATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATG 603
Query 601 ACCATTAAAGCAGCTAACGATAACATGTTACTAGTCAAAAACATTCATGGACTAGTGAAC 660
|||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 604 ACCACTAAAGCAGCTAATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAAT 663
Query 661 GCGGTGTGTTGGGGGATTTTCATGCCCATCGGTGTTATGGCTGCAAGGTACATGAGGACC 720
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 664 GCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACC 723
Query 721 TACAAAGGACTGGATCCCACTTGGTTTTACATAC 754
|||||||||||||| ||||||||||| |||||||
Sbjct 724 TACAAAGGACTGGACCCCACTTGGTTCTACATAC 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5