BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916396
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G56780.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 610 7e-174
> AT3G56780.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:21031613-21033202 FORWARD
LENGTH=1296
Length=1296
Score = 610 bits (330), Expect = 7e-174
Identities = 725/905 (80%), Gaps = 69/905 (8%)
Strand=Plus/Plus
Query 10 ATTGGACCATGGATTAGTA--GAGTCTTTCATTATCATCATTGCTACCTTCGTGAGCTCC 67
||||||||||||||||| | | | | ||||| ||||||||||| |||| ||||||||
Sbjct 271 ATTGGACCATGGATTAGAACCGCG-C-TTCATCATCATCATTGCCACCTCCGTGAGCTAG 328
Query 68 AGATAGATGCTGGTGCTG-CATATACCCCAATACCTCATGAATTGTTTACTTGCAAGACA 126
||||||||||| || || | ||||| | |||||| |||||||||||| ||||| |||
Sbjct 329 AGATAGATGCTTGTATTGTC-CATACCGTATTACCTCCTGAATTGTTTACCTGCAAAACA 387
Query 127 CTTGTTGTCTTGAAACTCCAAGGTGA-A-TCGATAAAAGTGGAAG--GC-CTTACAACAG 181
|||||||||||||||||| ||||| | | | ||| | ||||||| | |||||||| |
Sbjct 388 CTTGTTGTCTTGAAACTCAAAGGT-ATAGT-GATCGATGTGGAAGCTCCTCTTACAACGG 445
Query 182 TCTGTCTCCCATCCTTAAAAACTCTGCACACTGACCATTCGA-TTATATTC-TCGTCTGT 239
||| |||||||||| ||||||||||||||| |||||| |||| || ||||| | | ||
Sbjct 446 TCTCTCTCCCATCCCTAAAAACTCTGCACATTGACCACTCGAGTT-TATTCGAC-TTTGG 503
Query 240 ACCCCTT-AAATTGCTTCTATCCAATTGCAATTTTCTTACTGACCTTAA-GATCATATG- 296
| ||||| ||| ||||| ||||||||||||||||| ||||||||| ||| | ||||| |
Sbjct 504 ATCCCTTCAAA-TGCTTTTATCCAATTGCAATTTTATTACTGACC-TAATGGTCATAAGA 561
Query 297 GATATCAGGAGTGTGTTTATT-C-GAGTTCGATGTTTCTTGGTGCAAAA-AGCTTGTGGC 353
|| ||| || | ||| || | |||| ||| ||||||||||| |||| | ||| ||||
Sbjct 562 GA-ATC--TCGTTTCTTTTTTGCTGAGTACGACGTTTCTTGGTGTAAAACA-CTTATGGC 617
Query 354 CTTGAAACTCGAAGGTTTGATGGATGTGATCAG-TTTATCTTCTTCTTCCGCGGTCTGTC 412
||||||||||||||| |||| ||||||||| || || ||||||||||||||||| ||||
Sbjct 618 CTTGAAACTCGAAGGCTTGAAGGATGTGATAAGCATT-TCTTCTTCTTCCGCGGTATGTC 676
Query 413 TCCCGTTCCTCAATACTCTGCATGTTACTCACATTTGGA--AGTTGAACAATGATTTCTT 470
|||| ||||||| ||||| |||||| | | || |||| | || |||||||||| |||
Sbjct 677 TCCCACTCCTCAAAACTCTCCATGTTGCCCGCA--TGGAGGACTTTAACAATGATTCCTT 734
Query 471 CTGTCGACTTTTATCCAACTGTCCTCTTCTTTCCGACCTAACATTGGAAGAAAAAACCAG 530
||||| ||||||||||| || ||| |||| |||||||||||| ||||||||||||||||
Sbjct 735 TTGTCGGCTTTTATCCAATTGCCCTGTTCTCTCCGACCTAACACTGGAAGAAAAAACCAG 794
Query 531 CAATGTTATGCTCG-ATTTGAACATCGTCTTGCC-TAGCTTACAAAGATTGTCGATTATC 588
||||| || | | ||||| | |||| | |||| || ||||||||||||||||||||||
Sbjct 795 TGATGTTTTG-TTGAATTTGGATATCGACATGCCTTA-CTTACAAAGATTGTCGATTATC 852
Query 589 ACAAAATTCAAT--AG-TTCCA--CACACTTGTGTAGTTT-ACTTGAAAAT-TGCATTGG 641
|||| | || || || ||||| || | || | |||||| | | ||||| | || | |
Sbjct 853 ACAAGAGTCGATGCAGATTCCAAGCATATTT-T-TAGTTTGA-T-GAAAAACTACACTCG 908
Query 642 AAAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCACCATTCAAGAG--GACATGT-C 698
|||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |
Sbjct 909 AAAGCTTGCGATTATCGCACCTTCTTTCAAGTACTTCAGCATTCAAGAGTTGGCATATGC 968
Query 699 GTTGTCTATTTTAATCCCCTTTTAT-GTGA-GGGTTAGACTCGGAGATCCATCAAAACTA 756
| | || | || | | || || | ||||||| ||||||| |||||||||| ||
Sbjct 969 AA-GCCG-TT--A--CCGGTAT-ATTGT-ACGGGTTAGGCTCGGAGTTCCATCAAAATTA 1020
Query 757 GAATATACAAGTGTCTTC-GATCGAATTGTACATCTGGAGCAGAGCATATGT-GATGAAA 814
|| || ||||| |||| | |||||| || |||||||||| |||||||||| | |||||
Sbjct 1021 GAGGATGCAAGTACCTTCAG-TCGAATCGTGCATCTGGAGCTGAGCATATGTAG-TGAAA 1078
Query 815 TATCTCAGAGAAC-GCTTGTAGATTTGCTCCAACGTTTCACTAAATTGGTGGTTCTCAAG 873
|||| | ||| ||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 1079 GATCTGTG-GAAATGCTTGTAGATTTGCTCCTATGTTTCACTAAATTGGTGGTCCTCAAG 1137
Query 874 CTTGA 878
|||||
Sbjct 1138 CTTGA 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43050663979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5