BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916399
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25750.1 | Symbols: | F-box family protein with a domain of... 808 0.0
AT2G26160.1 | Symbols: | F-box family protein with a domain of... 241 7e-63
> AT3G25750.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr3:9400955-9402088 FORWARD
LENGTH=1047
Length=1047
Score = 808 bits (437), Expect = 0.0
Identities = 549/600 (92%), Gaps = 20/600 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGAGAAAACTGAGTGGTCTGATTTACCTGAAGAACTCCTAGATTTAATTGCAAACCGT 60
Query 61 TATTCCTCCAACATCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTCTACG 120
|||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| ||
Sbjct 61 TATTCCTCCAACATTGACGTCCTACGTATCCGTAGCACCTGTAAATCCTGGCGTTCTGCG 120
Query 121 GTTACGATGTCTAAAGAGTGTCTTCAGTTTTGCTTT-TACAGCTACCTTCCTACCTCCAA 179
||| |||||||||||||| ||||||||||| ||||| || |||||||||||||||||||
Sbjct 121 GTTGCGATGTCTAAAGAGCGTCTTCAGTTTCGCTTTGAAC-GCTACCTTCCTACCTCCAA 179
Query 180 TAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTTTTCCGTATAACTCTCCCTTCTTC 239
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 180 CAAGAAGATAAAGGCTCATCTCTCTCCCACCACTTTCTTCCGTATAACTCTCCCTTCTTC 239
Query 240 ATGTCCTAACAAAGGATGGCTAATAAGAACTAGCCAAGCCTCC-AAA--TATTGTAAGAT 296
|||||||||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||
Sbjct 240 ATGTCCTAACAAAGGATGGCTAGTAAGAACTAGACAAGCCTCCAAAATGTATCGTAAGAT 299
Query 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356
|||||||||| ||||| |||||||||||| ||||| || |||||||||||||||||||||
Sbjct 300 TACTCTCTTGTGTCCTCTCTCTGGCGAGCGCATCACCCGTTCCCACCAAACCCTAGACCT 359
Query 357 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTATAAA-ATTTGATGGAT 415
||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 360 TTTGAAGGTTGGCGTTTCAGAGATTCGCCAATCTTACGAGATTC-AAATATTCGATGGAT 418
Query 416 TGAAGGACGAAGAGATACCATCAGAT--A----TATTCTCTAATTATGAT-ATGAAGTA- 467
||||||||||| ||||||||| |||| | |||||||||||||| || | ||| ||
Sbjct 419 TGAAGGACGAAAAGATACCATTAGATTCAGAGATATTCTCTAATTAT-ATCAAGAA-TAG 476
Query 468 TGATAAGAA-ACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAATAACCAAGTCAAAG 526
||| || || |||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 477 TGACAA-AATACCATCAGAAGGAAGTAGAAGTTGGACAAAAATTAAAAACCAAGTCGAAG 535
Query 527 ATTTCTTGGACATTATACTTCACATGGGACATATCTATGCCGTGGACTTAAA-GGAGCAA 585
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 536 ATTTCTCGGACATTATACTTCACATGGGACGTATCTATGCCGTGGACTTAAAAGGAGCAA 595
> AT2G26160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:11137978-11139451 REVERSE
LENGTH=1474
Length=1474
Score = 241 bits (130), Expect = 7e-63
Identities = 326/417 (78%), Gaps = 27/417 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAAAA-CTGAGTGGTCTGATTTACCTGAAGAACTCCT-AGATTTAATTGCAAACC 58
||||| |||| ||||||||||||| ||||||| ||| ||| | | |||||| |||||||
Sbjct 1 ATGGA-AAAACCTGAGTGGTCTGAATTACCTGGAGACCTCATCA-ATTTAACCGCAAACC 58
Query 59 -TTTATTCCTCCAACA-TCGACGTCCTCCGTATCCGTAGCATCTGTAAATACTGGCGTTC 116
||| ||||||| | | |||||||||||| | ||||||||||||||| |||||||||
Sbjct 59 GTTT-CTCCTCCATTAGT-GACGTCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTC 116
Query 117 TACGGTTACGATGTCTAAAGAGTGTCTTCAGTTTTGCTTTTACAGCTACCTTCCTACCTC 176
||| | ||| | ||||| | |||| || || |||||||| ||||
Sbjct 117 GGCGGCTGCGA-CACCGAAGAG-CT-TTCA---ATG------CA---ACCTTCCTTCCTC 161
Query 177 CAATAAGAAGATAAAGGCTCATCTCTTTCCCACCACTTTTTTCCGTATAACTCTCCCTTC 236
||| |||| |||| || || ||||| |||||||||||| |||||| ||||| ||||||
Sbjct 162 CAACAAGATGATAGAGACTGTTCTCTCTCCCACCACTTTCTTCCGTGTAACTGGCCCTTC 221
Query 237 TTCATGTCCTAACAAAGGATGGCTAATAAGAACTAGCCAAGCCTCCAAATATTGTAAGAT 296
||||||| || ||||||||||||| || ||||| | |||| ||| ||| |||||||
Sbjct 222 TTCATGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCTGAATCCAGTAAGAT 281
Query 297 TACTCTCTTGAGTCCTATCTCTGGCGAGCTCATCATCCATTCCCACCAAACCCTAGACCT 356
|| ||||||| |||| ||| | || ||||| | | || ||| || ||||||||||||||
Sbjct 282 TAATCTCTTGTCTCCTTTCTTTCGCCAGCTCCTAACCCCTTCACAACAAACCCTAGACCT 341
Query 357 TTTGAAGGTTG-GCGTTTCAGAGATTCGCCAATCTTACGAGATT-ATAAAATTTGAT 411
|||||| ||| | |||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 342 TTTGAAATTTGAG-GTTTCAGAGATTCGCCAATCTTACGAGATTCATATA-TTTGAT 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5