BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916411
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48820.2 | Symbols: ICK6 | inhibitor/interactor with cyclin-... 566 1e-160
> AT5G48820.2 | Symbols: ICK6 | inhibitor/interactor with cyclin-dependent
kinase | chr5:19792270-19794408 REVERSE LENGTH=1123
Length=1123
Score = 566 bits (306), Expect = 1e-160
Identities = 380/413 (92%), Gaps = 15/413 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAAATACATGAAGAAATCCAAGATTACTGGCGATATCAGTGTCATGGAAGTCTCT 60
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 63 ATGGGGAAATACATGAAGAAATCAAAGATAACTGGCGATATCAGCGTCATGGAAGTCTCT 122
Query 61 AAGGCAACAG---C---TCCAGGTGTTCGAACCAGAGCCGCTAAAACCCTAGCCTTGAAG 114
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AAAGCAACAGCTCCAAGTCCAGGTGTTCGAACCAGAGCCGCTAAAACCCTAGCCTTGAAG 182
Query 115 CGGCTTAATTCCTCCGCCGCTGATTCAGCTCTACCTAACGACTCTTCTTGCTATCTTCAG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGGCTTAATTCCTCCGCCGCTGATTCAGCTCTACCTAACGACTCTTCTTGCTATCTTCAG 242
Query 175 CTCCGTAGCCGCCGTCTCGAGAAACCCTCGTCGCTGATTGAACCGAAACAGCCGCCGAGA 234
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 243 CTCCGTAGCCGCCGTCTCGAGAAACCCTCTTCGCTGATTGAACCGAAACAGCCGCCGAGA 302
Query 235 GCTCACAAATCGGGAATCAAAGAGTCTGGTTCAAGGTCTCGCGTTGACTCAGTTAACTCG 294
| ||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 303 GTTCACAGATCGGGAATTAAAGAGTCTGGTTCCAGGTCTCGCGTTGACTCGGTTAACTCG 362
Query 295 GTTGACTCGGTTCCTGTAGCTCAGAGCTCTAATGGAGATGAATGTTTTGATAATTTCGTG 354
||| | | | ||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 363 GTT--C-C--T----GTAGCTCAGAGCTCTAATGAAGATGAATGTTTTGACAATTTCGTG 413
Query 355 AGTGCCCAGGTTTCTTATGGAGAGAACAGTCTCGATTTTGAATCAAGACACAG 407
|||| ||| ||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct 414 AGTGTCCAAGTTTCTTGTGGTGAAAACAGTCTCGGTTTTGAATCAAGACACAG 466
Score = 409 bits (221), Expect = 2e-113
Identities = 251/266 (94%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 407 GCACAAGAGAGAGCACGCCTTGTAACTTTGTTGAGGATCTGGAGATCATGGTTACACCAG 466
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 520 GCACAAGGGAGAGCACGCCTTGTAACTTTGTTGAGGATATGGAGATCATGGTTACACCAG 579
Query 467 GGTCTAGCACAAGGTCGATGCGCAGAGCAACCAAAGAGTACACAAGGGACCAAGATAGCG 526
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||
Sbjct 580 GGTCTAGCACGAGGTCGATGTGCAGAGCAACCAAAGAGTACACAAGGGAACAAGATAACG 639
Query 527 TGATCCCGACCACTAGTGAGTTGGAGGAGTTTTTTGCCTATGCAGAGCAGCAACAACAGA 586
||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||
Sbjct 640 TGATCCCGACCACTAGTGAAATGGAGGAGTTCTTTGCATATGCAGAGCAGCAGCAACAGA 699
Query 587 GGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGAAATCCCCCTCAGCGGACGAT 646
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 700 GGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGATATCCCCCTCAGCGGACGTT 759
Query 647 ACGAATGGGTACAAGTCAATCCATGA 672
|||||||||| |||||||| ||||||
Sbjct 760 ACGAATGGGTGCAAGTCAAACCATGA 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5