BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916422
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48905.1 | Symbols: LCR12 | low-molecular-weight cysteine-ri... 388 1e-107
> AT5G48905.1 | Symbols: LCR12 | low-molecular-weight cysteine-rich
12 | chr5:19831284-19831787 FORWARD LENGTH=255
Length=255
Score = 388 bits (210), Expect = 1e-107
Identities = 241/256 (94%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 1 ATGTCTA-GAAAATTATTTTCTTTTTTCATGGTTTTGGTAGTTCTCTTCTCAGTATTATT 59
||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTCTACG-AAATTATTTTCTTATTTCATGCTTTTGGTAGTTCTCTTCTCAGTATTAAC 59
Query 60 GATTATTCCTAAAACTGAGGCACAAAAGAGATGCAGACAAGAACTAGAGCCAGGAAAGCA 119
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 60 GATTATTCCTAAAACTGAGGCACAAAAGAGATGTAGACAAGAACTAGAGCCGGGAAAGCA 119
Query 120 ATGTGTGTTGGCAAACTGTAGGGAACTGTGTTTCAAAAAATTGAAAGGATTCGGGAGTTG 179
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 ATGTGTGTTGGCAAAGTGTAGGGAACTGTGTTTCAAACAATTGAAAGGATTCGGGAGTTG 179
Query 180 TATTGAGAAGCCACCAGGCTCTGCTAAGTACACATGTAATTGTTTTTACAATTGTGGTCC 239
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||
Sbjct 180 TATTGAGAAGCCACCAGGCTCTTCTAAGTATACATGTAATTGTTTCTACAATTGTGGTCC 239
Query 240 ACCTGGAGTTTTTTAG 255
||| ||| ||||||||
Sbjct 240 ACCAGGATTTTTTTAG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5