BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916430
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48953.1 | Symbols: LCR86 | low-molecular-weight cysteine-ri... 344 2e-94
> AT5G48953.1 | Symbols: LCR86 | low-molecular-weight cysteine-rich
86 | chr5:19847711-19848250 REVERSE LENGTH=258
Length=258
Score = 344 bits (186), Expect = 2e-94
Identities = 235/259 (91%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 1 ATGCAAAACAAGAAACAATCACATATATTCATTGCCATAACAATTGTTCTCTTGTTTGCG 60
||||| ||| ||||||| ||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1 ATGCAGAACCAGAAACATTCACATATACTGACTGCCATAACAATTGTTCTCTTGTTTGCG 60
Query 61 ATGGCATATAAAATAAACGCTATTGACGTTCATGACGCCGTTTGTTTTCGGTCAGAGTGT 120
||||| ||||||||||||||||||||||||||||||| | |||| |||||| ||||||
Sbjct 61 ATGGCCGCTAAAATAAACGCTATTGACGTTCATGACGCCATGTGTTATCGGTCCGAGTGT 120
Query 121 ACAAGCGTATGTGAT-ACGATTTGCTTAAGCAAAGGCTATAAAAATGGATGGTATTGTGG 179
||||||||||||||| | ||||||||||||| | || |||| ||||||||||||||||||
Sbjct 121 ACAAGCGTATGTGATCA-GATTTGCTTAAGCCACGGGTATACAAATGGATGGTATTGTGG 179
Query 180 AACATTTAGACTGCACACTGGATGTTGTTGTCTAAAAAAGAAAGAACTCAACCAAATAAT 239
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 180 AACATTTAGACTCCACACTGGATGTTGTTGTCTCAAGAAGAAAGAACTCAACCAAATAAT 239
Query 240 ATATCCATCAAAAAACTAA 258
|| |||||| |||||||||
Sbjct 240 ATCTCCATCGAAAAACTAA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11762653266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5