BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916473
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49130.1 | Symbols: | MATE efflux family protein | chr5:199... 2296 0.0
AT5G49138.1 | Symbols: | other RNA | chr5:19915868-19917277 RE... 1779 0.0
> AT5G49130.1 | Symbols: | MATE efflux family protein | chr5:19915872-19917525
FORWARD LENGTH=1541
Length=1541
Score = 2296 bits (1243), Expect = 0.0
Identities = 1422/1510 (94%), Gaps = 5/1510 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGTCGAAGAAGATTCACGTCTCATAAATCTCCAACACAAGTACAACCCGACAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 ATGGTGGTCGAAGAAGATTCACGTCTCATAAATCTCCAACACAAGTACAACCCGACAATG 92
Query 61 CCCGAGGTGGTGGAGGAGATGAAGAGAATTTGGGACATAAGTTTCCCGGTGGCCGCCATG 120
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 93 CCCGAGGTGGTGGAGGAGCTGAAGAGAATTTGGGACATAAGTTTTCCGGTGGCCGCCATG 152
Query 121 AGCATACTAAACTACCTAAAGAACATGACCTCCGTCGTGTGTATGGGCCGTCTTGGTAGC 180
|||||| |||||||||||||||||||||| ||||||||||||||||| || || ||||||
Sbjct 153 AGCATATTAAACTACCTAAAGAACATGACATCCGTCGTGTGTATGGGACGACTCGGTAGC 212
Query 181 CTCGAGCTCGCAGGAGGTGCCTTAGCCGTCGGTTTTACCAACATAACCGGTTACTCCGTC 240
|| |||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 213 CTTGAGCTCGCAGGAGGAGCCTTAGCCATCGGTTTCACCAACATCACCGGTTACTCCGTC 272
Query 241 CTCTCCGGTTTAGCCACCGGTATGGAACCACTATGTGGTCAAGCCATCGGTTCCAAAAAC 300
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 273 CTCTCTGGTTTAGCCACCGGTATGGAACCATTATGTGGTCAAGCCATCGGTTCTAAAAAC 332
Query 301 CCTTCACTAGCTTCCTTAACCCTCAAGCGAACCATATTTCTCCTTCTCTTAGCTTCTCTT 360
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 333 CCTTCACTCGCTTCCTTAACCCTCAAGCGAACCATCTTCCTCCTTCTCTTAGCTTCTCTT 392
Query 361 CCCATCTCACTTCTCTGGCTAAATCTCACGCCTCTAATGCTAATGCTCCGCCAACAACAA 420
||||| ||||| || |||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 393 CCCATATCACTCCTTTGGCTAAACCTCGCGCCTCTAATGCTGATGCTCCGCCAACAACAT 452
Query 421 GATATCACACGTGTCGCATCTCTCTATTGCTCCTTCTCTTTGCCTGATCTTCTTGCTAAT 480
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 453 GATATCACTCGTGTCGCATCTCTCTATTGTTCCTTCTCTTTGCCTGATCTTCTCGCTAAT 512
Query 481 AGCTTCCTTCACCCTTTACGTATTTACTTACGTTGTAAAGGCACCACTTGGCCTTTGATG 540
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AGTTTCCTTCATCCTTTACGTATTTACTTACGTTGTAAAGGCACCACTTGGCCTTTGATG 572
Query 541 TGGTGCACGTTAGTCTCCGTCCTTCTTCATCTTCCCATTACCGCTTTCTTCACGTTTTAC 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 573 TGGTGCACGTTAGTCTCCGTCCTTCTTCATCTTCCCATTACTGCTTTCTTCACGTTTTAC 632
Query 601 ATCTCTCTTGGAGT-CGCCGGAGTCGCCATCTCCTCTTTTCTTACCAACTTTATCTCCTT 659
|||||||| ||||| | ||||||||||| |||| ||||||||||||||||| ||||| ||
Sbjct 633 ATCTCTCTCGGAGTTC-CCGGAGTCGCCGTCTCTTCTTTTCTTACCAACTTCATCTCTTT 691
Query 660 GTCGCTTCTCCTTTGCTACATCTACTTGGAAAACAACAACAACGACAAAACCAGTTCTAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 692 GTCGCTTCTCCTTTGCTACATCTACTTGGAAAACAACAACAACGACAAAACCACTTCCAA 751
Query 720 GTCTCTTTGTCTTGATACGCCGTTGATGCTGTCTGGTTCCAGAGACTCCGGTGTAGATGA 779
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||
Sbjct 752 GTCTCTTTGTCTTGATACGCCGTTGATGCTGTATGGTTCGAGAGACTCCGGTGAAAATGA 811
Query 780 AGTGTGGTCAACGCTGGTTAAGTTCGCCGTCCCGAGCTGTATAGCGGTTTGCTTGGAGTG 839
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 812 TGTGTGGTCAACGCTGGTTAAATTCGCTGTTCCGAGCTGTATAGCGGTTTGCTTGGAGTG 871
Query 840 GTGGTGGTATGAGTTCATGACGGTCCTCGCCGGATATCTCCCGGAGCCGAAGGTGGCGCT 899
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 872 GTGGTGGTACGAGTTCATGACGGTCCTCGCTGGATATCTCCCCGAGCCGAAGGTGGCGCT 931
Query 900 AGCAGCGGCCGCCATCGTGATCCAAACGACGTCATTGATGTATACAATCCCAACCGCCCT 959
|||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct 932 AGCAGCAGCCGCCATCGTGATACAAACAACCTCATTGATGTATACAATCCCAACGGCCCT 991
Query 960 CTCTGCCGCGGTTTCCACAAGGGTAAGCAACGAGTTAGGAGCAGGACGGCCAGAGAAAGC 1019
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 992 CTCGGCCGCGGTATCCACGAGGGTAAGCAACGAGTTAGGAGCAGGACGGCCAGAGAAAGC 1051
Query 1020 ACGTACAGCGGCGGCAGTAGCGGTCGGAGCCGCCATGGCCGTGTCAGTGTTTGGACTTGT 1079
| ||||||||| | || || |||||||||||| |||| ||||||||||||||||||||
Sbjct 1052 AAAAACAGCGGCGACTGTGGCTGTCGGAGCCGCCGTGGCAGTGTCAGTGTTTGGACTTGT 1111
Query 1080 GGGGACCACCCTGGGAAGAGAAGCTTGGGGAAAAGTTTTCACGGCGGACGGAGTTGTCCT 1139
|||||||||| |||| |||||||||||||||||||||||||| || ||| |||||||||
Sbjct 1112 GGGGACCACCGTGGGGAGAGAAGCTTGGGGAAAAGTTTTCACCGCCGACAAAGTTGTCCT 1171
Query 1140 CGAGCTGACGGCGGCCGTTCTTCCGGTGATAGGAGCTTGTGAGCTTGCCAACTGTCCTCA 1199
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1172 CGAGCTGACGGCGGCGGTTATTCCGGTGATTGGAGCTTGTGAGCTTGCCAACTGTCCTCA 1231
Query 1200 GACCATTAGCTGTGGAATCCTACGTGGCAGTGCGAGGCCAGGTATAGGGGCCAAGATTAA 1259
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GACCATTAGCTGTGGAATCTTACGTGGCAGTGCGAGGCCAGGTATAGGGGCCAAGATTAA 1291
Query 1260 TTTCTACGCCTTCTATGTAGTTGGAGCACCAGTGGCTGTTGTTTTAGCGTTTGTGTGGGG 1319
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1292 TTTCTACGCCTTCTATGTAGTTGGAGCACCAGTGGCGGTTGTTTTAGCGTTTGTGTGGGG 1351
Query 1320 TTTAGGCTTCATGGGCCTATGCTATGGTTTGCTTGGGGCACAGCTAGCTTGTGCAATCTC 1379
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1352 TTTAGGCTTCATGGGCCTATGCTATGGCTTGCTTGGGGCACAGCTAGCTTGTGCAATCTC 1411
Query 1380 CATTTTGATCGTTGTCTATAACACAGATTGGAACAAAGAGTCCTTGAAGGCTCATGACTT 1439
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 CATTTTGACCGTTGTTTATAACACAGATTGGAACAAAGAGTCCTTGAAGGCTCATGACTT 1471
Query 1440 GGTGGGCAAAAACGTCATTTCTC--A-TGTCGATCAAATTATTGTCAAATGCGAAGAAGG 1496
||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1472 GGTGGGCAAGAACGTCATTTCACCTAATGTCGATCAAATTATTGTCAAATGCGAAGAAGG 1531
Query 1497 TCTACACTAA 1506
|||||||||
Sbjct 1532 CCTACACTAA 1541
> AT5G49138.1 | Symbols: | other RNA | chr5:19915868-19917277
REVERSE LENGTH=1410
Length=1410
Score = 1779 bits (963), Expect = 0.0
Identities = 1120/1198 (93%), Gaps = 2/1198 (0%)
Strand=Plus/Minus
Query 65 AGGTGGTGGAGGAGATGAAGAGAATTTGGGACATAAGTTTCCCGGTGGCCGCCATGAGCA 124
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1197 AGGTGGTGGAGGAGCTGAAGAGAATTTGGGACATAAGTTTTCCGGTGGCCGCCATGAGCA 1138
Query 125 TACTAAACTACCTAAAGAACATGACCTCCGTCGTGTGTATGGGCCGTCTTGGTAGCCTCG 184
|| |||||||||||||||||||||| ||||||||||||||||| || || |||||||| |
Sbjct 1137 TATTAAACTACCTAAAGAACATGACATCCGTCGTGTGTATGGGACGACTCGGTAGCCTTG 1078
Query 185 AGCTCGCAGGAGGTGCCTTAGCCGTCGGTTTTACCAACATAACCGGTTACTCCGTCCTCT 244
||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||
Sbjct 1077 AGCTCGCAGGAGGAGCCTTAGCCATCGGTTTCACCAACATCACCGGTTACTCCGTCCTCT 1018
Query 245 CCGGTTTAGCCACCGGTATGGAACCACTATGTGGTCAAGCCATCGGTTCCAAAAACCCTT 304
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1017 CTGGTTTAGCCACCGGTATGGAACCATTATGTGGTCAAGCCATCGGTTCTAAAAACCCTT 958
Query 305 CACTAGCTTCCTTAACCCTCAAGCGAACCATATTTCTCCTTCTCTTAGCTTCTCTTCCCA 364
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 957 CACTCGCTTCCTTAACCCTCAAGCGAACCATCTTCCTCCTTCTCTTAGCTTCTCTTCCCA 898
Query 365 TCTCACTTCTCTGGCTAAATCTCACGCCTCTAATGCTAATGCTCCGCCAACAACAAGATA 424
| ||||| || |||||||| ||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 897 TATCACTCCTTTGGCTAAACCTCGCGCCTCTAATGCTGATGCTCCGCCAACAACATGATA 838
Query 425 TCACACGTGTCGCATCTCTCTATTGCTCCTTCTCTTTGCCTGATCTTCTTGCTAATAGCT 484
|||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 837 TCACTCGTGTCGCATCTCTCTATTGTTCCTTCTCTTTGCCTGATCTTCTCGCTAATAGTT 778
Query 485 TCCTTCACCCTTTACGTATTTACTTACGTTGTAAAGGCACCACTTGGCCTTTGATGTGGT 544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCCTTCATCCTTTACGTATTTACTTACGTTGTAAAGGCACCACTTGGCCTTTGATGTGGT 718
Query 545 GCACGTTAGTCTCCGTCCTTCTTCATCTTCCCATTACCGCTTTCTTCACGTTTTACATCT 604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 GCACGTTAGTCTCCGTCCTTCTTCATCTTCCCATTACTGCTTTCTTCACGTTTTACATCT 658
Query 605 CTCTTGGAGT-CGCCGGAGTCGCCATCTCCTCTTTTCTTACCAACTTTATCTCCTTGTCG 663
|||| ||||| | ||||||||||| |||| ||||||||||||||||| ||||| ||||||
Sbjct 657 CTCTCGGAGTTC-CCGGAGTCGCCGTCTCTTCTTTTCTTACCAACTTCATCTCTTTGTCG 599
Query 664 CTTCTCCTTTGCTACATCTACTTGGAAAACAACAACAACGACAAAACCAGTTCTAAGTCT 723
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 598 CTTCTCCTTTGCTACATCTACTTGGAAAACAACAACAACGACAAAACCACTTCCAAGTCT 539
Query 724 CTTTGTCTTGATACGCCGTTGATGCTGTCTGGTTCCAGAGACTCCGGTGTAGATGAAGTG 783
|||||||||||||||||||||||||||| |||||| ||||||||||||| | |||| |||
Sbjct 538 CTTTGTCTTGATACGCCGTTGATGCTGTATGGTTCGAGAGACTCCGGTGAAAATGATGTG 479
Query 784 TGGTCAACGCTGGTTAAGTTCGCCGTCCCGAGCTGTATAGCGGTTTGCTTGGAGTGGTGG 843
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 478 TGGTCAACGCTGGTTAAATTCGCTGTTCCGAGCTGTATAGCGGTTTGCTTGGAGTGGTGG 419
Query 844 TGGTATGAGTTCATGACGGTCCTCGCCGGATATCTCCCGGAGCCGAAGGTGGCGCTAGCA 903
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 418 TGGTACGAGTTCATGACGGTCCTCGCTGGATATCTCCCCGAGCCGAAGGTGGCGCTAGCA 359
Query 904 GCGGCCGCCATCGTGATCCAAACGACGTCATTGATGTATACAATCCCAACCGCCCTCTCT 963
|| |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 358 GCAGCCGCCATCGTGATACAAACAACCTCATTGATGTATACAATCCCAACGGCCCTCTCG 299
Query 964 GCCGCGGTTTCCACAAGGGTAAGCAACGAGTTAGGAGCAGGACGGCCAGAGAAAGCACGT 1023
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCCGCGGTATCCACGAGGGTAAGCAACGAGTTAGGAGCAGGACGGCCAGAGAAAGCAAAA 239
Query 1024 ACAGCGGCGGCAGTAGCGGTCGGAGCCGCCATGGCCGTGTCAGTGTTTGGACTTGTGGGG 1083
||||||||| | || || |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 238 ACAGCGGCGACTGTGGCTGTCGGAGCCGCCGTGGCAGTGTCAGTGTTTGGACTTGTGGGG 179
Query 1084 ACCACCCTGGGAAGAGAAGCTTGGGGAAAAGTTTTCACGGCGGACGGAGTTGTCCTCGAG 1143
|||||| |||| |||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 178 ACCACCGTGGGGAGAGAAGCTTGGGGAAAAGTTTTCACCGCCGACAAAGTTGTCCTCGAG 119
Query 1144 CTGACGGCGGCCGTTCTTCCGGTGATAGGAGCTTGTGAGCTTGCCAACTGTCCTCAGACC 1203
||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 118 CTGACGGCGGCGGTTATTCCGGTGATTGGAGCTTGTGAGCTTGCCAACTGTCCTCAGACC 59
Query 1204 ATTAGCTGTGGAATCCTACGTGGCAGTGCGAGGCCAGGTATAGGGGCCAAGATTAATT 1261
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATTAGCTGTGGAATCTTACGTGGCAGTGCGAGGCCAGGTATAGGGGCCAAGATTAATT 1
Score = 126 bits (68), Expect = 5e-28
Identities = 68/68 (100%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 1 ATGGTGGTCGAAGAAGATTCACGTCTCATAAATCTCCAACACAAGTACAACCCGACAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATGGTGGTCGAAGAAGATTCACGTCTCATAAATCTCCAACACAAGTACAACCCGACAATG 1315
Query 61 CCCGAGGT 68
||||||||
Sbjct 1314 CCCGAGGT 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74296806600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5