BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916479
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05870.1 | Symbols: UGT76C1 | UDP-glucosyl transferase 76C1 ... 418 1e-116
> AT5G05870.1 | Symbols: UGT76C1 | UDP-glucosyl transferase 76C1
| chr5:1767639-1769262 FORWARD LENGTH=1524
Length=1524
Score = 418 bits (226), Expect = 1e-116
Identities = 265/284 (93%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 11 AGAGTCAATTGATTCTCTTCCCTCTACCATTACAAGGTTGCATAAACCCTATGCTTCAGC 70
|||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGACAAGTGATTCTTTTTCCTCTACCATTACAAGGTTGCATAAACCCTATGCTTCAGC 120
Query 71 TAGCAAAGATCCTTTATTCAAGAAGTTTCTCGATCACTATCATCCACACGCGCTTTAACG 130
|||||||||||||||| |||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct 121 TAGCAAAGATCCTTTACTCAAGAGGTTTTTCGATCACCATCATCCACACGCGCTTCAACG 180
Query 131 CGGAGAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATCCCCGACGGCTTGTCCG 190
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 CGCCCAAATCTTCAGACCATCCTCTCTTCACTTTCTTACAAATCCGCGACGGCTTGTCTG 240
Query 191 AATCTCAGACTCAATCTCGTGATGTTTTGCTTCAACTCACGCTTCTCAACAACAATTG-C 249
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 241 AATCTCAGACTCAATCTCGTGATCTTTTGCTTCAACTCACGCTTCTCAACAACAATTGTC 300
Query 250 GAGAACCCATTTCGAGAGTGTTTGGCTAAACTCATCAAACCTAG 293
||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 301 -AGATCCCATTTCGAGAGTGTTTGGCTAAACTCATTAAACCTAG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5