BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916489
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT1G36925.1 | Symbols: | unknown protein; Has 69 Blast hits to... 514 5e-145
> AT1G36925.1 | Symbols: | unknown protein; Has 69 Blast hits
to 69 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa
- 45; Fungi - 4; Plants - 8; Viruses - 0; Other Eukaryotes
- 10 (source: NCBI BLink). | chr1:13986436-13987289 FORWARD
LENGTH=525
Length=525
Score = 514 bits (278), Expect = 5e-145
Identities = 406/461 (88%), Gaps = 36/461 (8%)
Strand=Plus/Plus
Query 1 ATGGCGATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCA-G-----GAAAACATT 54
||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 40 ATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCAGGATAAAGAAAACGTT 99
Query 55 CCTCCTAATTCTGAAGCTAACCCCATATCACCAATGCAACCAAACAGAGTTTCACCTAAT 114
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 100 CCTCCTAGTTCTGAAGCTAACTCCATATCACCAATGCAACCAAAGAGAGTTTCACCTAAT 159
Query 115 AGCTTGAGTGATATTACAAATGTAGAATGTGAATCTCCAAGGATGAAACGAATGCGTATT 174
|||||||||||||||||||||| | | ||||||||||||||||| ||||| ||| || ||
Sbjct 160 AGCTTGAGTGATATTACAAATG-A-A-TGTGAATCTCCAAGGATAAAACGGATGTGTGTT 216
Query 175 ATAAAGGAGACGAAAGATAAAAGAAAGAAAGGAGAATCATCTTCAGCTCCAAGTACTAAC 234
||||||||||| ||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 217 ATAAAGGAGACTAAAGAGAAAAGAAAGAAAGGAGAATCATCT-C--C---AAGTACTAAC 270
Query 235 TTGGACCAAAACTTGGACGAGACGACACCGAACGTTGACGAGACGACACAGAACGGCAAG 294
||||||||||| |||||||||||||||| ||||| | | | | | | | ||||
Sbjct 271 TTGGACCAAAAGTTGGACGAGACGACACAGAACG--G-C-A-A-G-----G---G-CAAG 315
Query 295 GGCAATGGCAATGGATTTCCATGTACTGCAGCAAGTAGGAGGAAAACAAACGTGCATAAG 354
||||| || | |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 316 GGCAA---CA--G-ATTTCCATGTACTGCAACAAGTAGAAGGAAAACAAACGTGCATAAG 369
Query 355 GAACCATATATGCAAGAATCAAGACATGATAATCACAAAGAAGCTCCATCTAAAGACCAT 414
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 370 GAACCATATATGCAAGAATCAAGACAAGATAATTACAAAGAAGCTCCATCTAAAGACCAT 429
Query 415 GCATCATCCTCACGTTCACATAATTCACTATATAACTCTGA 455
|||||||| ||||||||||||||||||||||||||| ||||
Sbjct 430 GCATCATCGTCACGTTCACATAATTCACTATATAACACTGA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5