BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916535
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 874 0.0
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 874 bits (473), Expect = 0.0
Identities = 560/602 (93%), Gaps = 5/602 (1%)
Strand=Plus/Plus
Query 260 CAATGGCAACGAAAGAAAGAG-TTTTAAATGAAGTTAAGATCATCAGCAAACTGAGACAT 318
||| |||| ||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1154 CAA-GGCAGGGAAAGAACGAGTTTTTAAACGAAGTTAAGATCATCAGCAAACTGAGACAT 1212
Query 319 CGAAACATGGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGTTCTTGCTGATATAT 378
|||||| | ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1213 CGAAACCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGATATAT 1272
Query 379 GAGTTAGTGCTAAATGGTAGCTTGAACTCCCACCTCTTTGGCAAAAGACCCCATTTACTT 438
|||||||| | |||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1273 GAGTTAGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTTACTT 1332
Query 439 TCTTGGGACATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCAT 498
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1333 TCTTGGGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCAT 1392
Query 499 GAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAAGCAAGCAATATAATGCTTGAC 558
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1393 GAAGAATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCTTGAC 1452
Query 559 AGTGATTTCAATGTAAAGTTAGGTGATTTCGGTTTGGCTCGGGTTTTGAACCATGAACAT 618
||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||| |
Sbjct 1453 AGTGAATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGAACTT 1512
Query 619 GGTTCCCATACAACAGGATTGGCTGGAACTTTTGGGTACATGGCACATGAATATGTAACG 678
|||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1513 GGTTCCCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGTAATG 1572
Query 679 AAAGGAAGTGCGAGTAAAGAGTCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATT 738
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1573 AAAGGAAGTGCGAGTAAAGAATCTGATATATATAGCTTTGGAATTGTTTTACTAGAGATT 1632
Query 739 GTCACAGGGAGAAAATCGCTGGAACGAACGCAAGAAGATAACAGTGATTCAGAGAGT-A- 796
|||||||||||||||||||||||||| || |||||||||||||||||| |||||||| |
Sbjct 1633 GTCACAGGGAGAAAATCGCTGGAACGTACACAAGAAGATAACAGTGATACAGAGAGTGAT 1692
Query 797 -ATGAGAAGAGTCTTGTGGAGAAAGTTTGGAAACTTTATGGAAAACAAGAAGTGATGACT 855
||||||||||||| ||||||||||||||| | |||||||||||||||||| |||| |||
Sbjct 1693 GATGAGAAGAGTCTAGTGGAGAAAGTTTGGGAGCTTTATGGAAAACAAGAACTGATCACT 1752
Query 856 TC 857
||
Sbjct 1753 TC 1754
Score = 163 bits (88), Expect = 3e-39
Identities = 110/120 (92%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 68 TTT-TGGTCCA-CACGATCGTGGTGGTTTGGTCACGGAAGCAAAGAAAAAAGAAAGACAG 125
||| |||| || ||| | |||||||||||||||||||||||||||||| |||||||| ||
Sbjct 892 TTTATGGT-CATCACAACCGTGGTGGTTTGGTCACGGAAGCAAAGAAAGAAGAAAGAAAG 950
Query 126 AGATATAGCAAACATGATATCGATAAACGAAGATCTTGAAAGGGAAGCAGGACCAAGAAA 185
|||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 951 AGATATAGAAAACATGATATCGATAAACAAAGACCTTGAAAGGGAAGCAGGACCAAGAAA 1010
Score = 108 bits (58), Expect = 1e-22
Identities = 64/67 (96%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1 ATGTTCGGGTTTATAGCTGCTGCTGGAAGAAACACAGAGGAACATAGACTTTTATCATGG 60
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 742 ATGTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGACTTTTATCATGG 801
Query 61 GAGCTCA 67
|||||||
Sbjct 802 GAGCTCA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5