BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916607

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G50110.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...  1059    0.0  


> AT5G50110.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr5:20373515-20376207 
FORWARD LENGTH=1018
Length=1018

 Score = 1059 bits (573),  Expect = 0.0
 Identities = 610/628 (97%), Gaps = 2/628 (0%)
 Strand=Plus/Plus

Query  1    ATGAATCTTACAGCAACTAAAGAAGCTGATGAAGTAATGGAGAGGCATATCGAAGATTCT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  ATGAACCTTACAGCAACTAAAGAAGCTGATGAAGTAATGGAGAGGCATATCGAAGATTCT  312

Query  61   CTTGCGATATTGCCTCCTATAAAGACTTGTTACAACTTGCATTCCAATGATTTGTTTGAT  120
            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct  313  CTTGCGATATTGCCTCCTATAAAGACTTGTTACAACTTACATTCCAGTGATTTGTTTGAT  372

Query  121  CATATCAATTTAATTGATGTTGGAAGCGGGGCGGGTCTTCCTGGGTTGGTTCTAGCCATT  180
            || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  373  CACATCAATTTAATCGATGTTGGAAGCGGGGCTGGTCTTCCTGGGTTGGTTCTAGCCATT  432

Query  181  GCATGTCCAGATTGGAGAGTTACTCTACTGGAGTCTATAAATAAGCGTTGTGTTTTCTTG  240
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  433  GCATGCCCAGATTGGAGAGTTACTCTACTGGAGTCTATAAATAAGCGATGTGTTTTCTTG  492

Query  241  GAGCACGTCGTGAATGTTACCGGGCTTACAAATGTTAAAATCGTTAGGGGCAGAGCAGAG  300
            |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  493  GAGCACGTTGTGAATGTTACCGGGCTTACAAATGTTACAATCGTTAGGGGCAGAGCAGAG  552

Query  301  AGTTGTGGGCACGATGTTATGTACAGAGAGAAGTTTGATGTGGCTATTGCAAGAGCTGTC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  553  AGTTGTGGGCACGATGTTATGTACAGAGAGAAGTTTGATGTGGCTATTGCAAGAGCTGTC  612

Query  361  GCGGAGATGAGAGTCTTAGCTGAATATTGTCTTCCTCTGGTTCGGATTGGTGGATTGTTT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  613  GCGGAGATGAGAGTCTTAGCTGAATATTGTCTTCCTCTGGTTCGGATTGGTGGATTGTTT  672

Query  421  GTAGCTGCTAAGGGTCATGACCCTAAGGAGGAAGTTCAAAATGCAGAAAATGCTGTTCGC  480
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  673  GTAGCTGCTAAGGGTCATGACCCAAAGGAGGAAGTTCAAAATGCAGAAAATGCTGTTCGC  732

Query  481  ATGTTGGGTGGTTCAAT-CTTACAAATCAGTCCAGTGGATTCACATAGCCCATACGGACA  539
             |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct  733  TTGTTGGGTGGTTCAATACT-ACAAATTAGTCCAGTGGATTCACATAGCCCATACGGACA  791

Query  540  GCGGACAACGGTTATTTGTCGTAAAGATAATTCCACCCCACAAAAATATCCACGTGAAGC  599
            ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  792  GCGGACAACGGTTGTTTGTCGTAAAGATCATTCCACCCCACAAAAATATCCACGTGAAGC  851

Query  600  AGGTACTCCTTCTAAATTACCGTTGTAA  627
            |||||||||| |||||||||||||||||
Sbjct  852  AGGTACTCCTGCTAAATTACCGTTGTAA  879



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5