BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916643
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50345.1 | Symbols: | Maternally expressed gene (MEG) famil... 374 3e-103
> AT5G50345.1 | Symbols: | Maternally expressed gene (MEG) family
protein | chr5:20497401-20497868 FORWARD LENGTH=391
Length=391
Score = 374 bits (202), Expect = 3e-103
Identities = 241/260 (93%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 6 ATCATCACATTTCGCTATCTTTTGCATCATCATCGTATCATTGTTTGCTCTTCATGAATG 65
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 9 ATCATCACATTTCGCTATCTTTTGCATCATCCTCGTTTCATTGTTTGCTCTTCAACAATA 68
Query 66 TGAAATTGGAAACATGGAGGAGAATCTTAACGCAAGCAAAATAGTTATATATCTATCACC 125
|||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||
Sbjct 69 TGAAATTGGAAACATGGAAGAGAATCTGAACGCCAGCAAAATAGTTGTATATCTATCACC 128
Query 126 GTGTGTTCGAAAACGTTGTAGCTTTAGCTTATTCAAGAATTGTCATTGCTGCAGAGGGAA 185
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 129 GTGTGTTAGAAAACGTTGTAGCTTTAGCTTATTCAAGAACTGTCATTGCTGCAGAGGGAA 188
Query 186 ATATC-CGTTTTGTTCAAAGAACATAAAAGTATGCGAGAAGGAGTGTCTAAGACTTAACC 244
|||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 189 GTATCAC-TTTTGTTCAAAGAACATAAAAGTATGCGAGAAGGAGTGTCTTAGACTTAACC 247
Query 245 CACCTCCACCTAGGCCATAG 264
|||| | |||| |||||||
Sbjct 248 CACCGCGACCTCTGCCATAG 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5