BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916649
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 643 0.0
> AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Molecular
chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20379489-20381036 FORWARD LENGTH=1458
Length=1458
Score = 643 bits (348), Expect = 0.0
Identities = 620/745 (83%), Gaps = 44/745 (6%)
Strand=Plus/Plus
Query 170 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 225
||| |||||| ||||| | | ||||||| |||||||||||| | |||| |||||||
Sbjct 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756
Query 226 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATGTAATGGCT-ATGAGTGTTCCAGAT 282
||| || || || | || ||||| || ||| |||| ||| | |||||||| || |||
Sbjct 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813
Query 283 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 340
||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| |
Sbjct 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871
Query 341 TATGGGCTGCTTATGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGGTTG 400
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931
Query 401 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 460
| ||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||
Sbjct 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991
Query 461 TGGGTTCAATGAAGAAGTGGATTGATTCAGGAGTACATTGGACGATATGTGAGAAAGGAT 520
|||||||||||||||||||||||||||||| || ||| || | | || | | |
Sbjct 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGG-GT--ATT--AC-A-A---GA-CGA-G-T 1038
Query 521 TGGTGC-ACATATATCCGAGAAAAGGCAATGTTTGGGCTCTTTATGAAAATTGGTCACCA 579
||||| || | || || | ||| | || |||||||||||||||| |||||||||||||
Sbjct 1039 GGGTGCTTCACA-AT-CG-GGAAACGAAACGTTTGGGCTCTTTATGCAAATTGGTCACCA 1095
Query 580 TCTTGGGATATTTCAACTTCAGTAGAAGAAAAGAACAAGTATGAAATGGTAGAAGTTCTT 639
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct 1096 TCTTGGGATATTTCAACTTCAGTAGAAGAAATGAACAAGTATGATATGGTAGAAGTGCTT 1155
Query 640 CAAGATTTC-AGTGAAGAGGGAGGTGTGACCGTTGTGCCATTAGTTCAAGTCCCAGGATT 698
||||||||| | |||||| |||||||||| ||||| || ||||| |||||||||||||
Sbjct 1156 CAAGATTTCGA-TGAAGAAAGAGGTGTGACAGTTGTACCGCTAGTTAAAGTCCCAGGATT 1214
Query 699 CATAACTGTCTTTCGACGCC-TTCCAAAACAGAGGACATTCCCAAGGAACGAACTGTTCA 757
|| |||||| ||||| |||| ||| || | |||||||| ||||||||| ||||||||||
Sbjct 1215 CAAAACTGTGTTTCGTCGCCGTTCGAATCC-GAGGACATACCCAAGGAAAGAACTGTTCA 1273
Query 758 GGTTCTCGCATCAGGTACCTTCTCATTTTCTTACAAGTCAAGA-TGGTGAGAATGCTCCT 816
||||||||||||| || ||| ||| || ||||||||| || | || | |||||||||||
Sbjct 1274 GGTTCTCGCATCAAGTTGCTTATCAATTACTTACAAGTAAAAAATG-TAAGAATGCTCCT 1332
Query 817 GA-AGGTTGCTTGGAGCTTGATCCAGCAGCTTTGCCACAAGAGCTGCTCAA-GATTGTCA 874
| || |||||||||||||||||||||| ||||| |||| ||||| ||||| | || |||
Sbjct 1333 -ACAGATTGCTTGGAGCTTGATCCAGCATCTTTGACACATGAGCTTCTCAAAG-TTCTCA 1390
Query 875 CTAAGGAGGAGATGAAAGAATCGGA 899
|| ||||||| ||| ||||| |||
Sbjct 1391 CTGAGGAGGA--TGAGAGAATTGGA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5