BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916651
Length=2856
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane pro... 1131 0.0
> AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane protein
kinase | chr1:2359673-2366447 REVERSE LENGTH=3231
Length=3231
Score = 1131 bits (612), Expect = 0.0
Identities = 1369/1724 (79%), Gaps = 94/1724 (5%)
Strand=Plus/Plus
Query 1050 ATATAAGCTGTACATAAACTGTGGGGGAGATGAAATAAAAGTTGATAAAGAAA-AGACAT 1108
|||||| |||||||||| || || |||| |||| ||||||| |||||||||| | ||||
Sbjct 1278 ATATAAATTGTACATAAATTGCGGAGGAGGTGAAGTAAAAGTGGATAAAGAAATA-ACAT 1336
Query 1109 A-CGAAGCTAACATAGA-G-GGCC-AACGACCTACTACATTTGT-CTATGGCTCTGACAA 1163
| | | ||| || || | || || | || ||| | || || |||| || ||||
Sbjct 1337 ATC-AGGCT--GAT-GACGAACCCAAAGGTGCTTCTATGTACGTCCT-TGGCGCTAACAA 1391
Query 1164 GCACTGGGCATTTAGTAGCACC-GGACACTTCAT-G--AATGATCTTACAGAAG-TGGAT 1218
|| |||||| || || |||||| ||| ||||||| | ||||| | || || | | |||
Sbjct 1392 GCGCTGGGCGTTGAGCAGCACCGGGA-ACTTCATGGACAATGA--TGAC-GATGCT-GAT 1446
Query 1219 GACTACACCGTGTC-TAACACCTCTACACTATTAGCCAATGCTTCTTCTCCAAG-TTTCG 1276
|| || || ||| | ||||| || | ||| || |||||||| ||||| || ||| |
Sbjct 1447 GAGTATACTGTG-CAGAACACATCCAGGTTATCAGTTAATGCTTCCTCTCCCAGCTTT-G 1504
Query 1277 TG-CTTTACAAGACGGCTCGGA-TTTCTCCTCTCTTGTTGACTTACTACGGACTCTGTCT 1334
| ||||| | ||| |||| || | |||||| | | |||||||||||||||| |||||||
Sbjct 1505 -GACTTTATAGGACAGCTC-GAGTCTCTCCTTTATCGTTGACTTACTACGGAATCTGTCT 1562
Query 1335 GGGCAATGGGGAGTACACTGTGAGTCTCCACTTCGCAGAGATAATATTTACCAG-CGACA 1393
|| |||||| | |||||||||| ||||||||| || ||||| || |||||| | ||||
Sbjct 1563 TGGAAATGGGAACTACACTGTGAATCTCCACTTTGCTGAGATCATCTTTACC-GATGACA 1621
Query 1394 GTACATTCTACAGTCTTGGCAAACGAGTCTTCGATATTTATGTTCAGGAGAAGTTGATGA 1453
|||||| |||||||| |||||||| | || ||||||||||||||||| ||||| |||
Sbjct 1622 ATACATTATACAGTCTCGGCAAACGTTTGTTTGATATTTATGTTCAGGATCAGTTGGTGA 1681
Query 1454 TTAAAAACTTCAACATTAAAGAAGCTGCTGGTGGATCGGGCAAGCCAATCA-TAAAGACA 1512
|||||||||| |||||| ||||||||||| | ||||| || |||||||||| |||| |
Sbjct 1682 TTAAAAACTTTAACATTCAAGAAGCTGCTCGAGGATCAGGTAAGCCAATCATTAAA-TCG 1740
Query 1513 TTTGTGGTAAATGTAACAAATCACATTCTGAAGATCAGCTTGAGGTGGGCTGGCAAAGGG 1572
||| ||||||||||||| | || | ||||||||| | ||| | |||||||||||||||
Sbjct 1741 TTTCTGGTAAATGTAACGGACCATACTCTGAAGATTGGTTTGCGATGGGCTGGCAAAGGG 1800
Query 1573 ACAACTACGC-TTCCAATTAGAGGAGTTTATGGCCCAATGATCTCAGCTATATCAGTTGA 1631
||||| | || |||| |||||||| || ||||| || ||||| ||||||||||| || ||
Sbjct 1801 ACAAC-AGGCATTCCGATTAGAGGGGTATATGGTCCTATGATTTCAGCTATATCTGTGGA 1859
Query 1632 ACCTAATTTTAAATCTCCGG-AGCATGATGACA-AGAAGAATATCCTGCTAATAGTAGGA 1689
||| ||||| ||| |||||| | || |||||| | ||| ||||| | |||| ||| ||
Sbjct 1860 ACCCAATTTCAAACCTCCGGTA-TATTATGACACA-AAGGATATCATACTAAAAGT-GGG 1916
Query 1690 ATTA--TAGTTGCCGCAGTAATC-C-TCATTTTGGCCATCATCACAGTGATCATTTGCTT 1745
|| | || || |||| || | | || |||| | | |||| |||| | | ||
Sbjct 1917 GGTACCT-GTCGCTGCAGCAA-CACTTC-TTTT-G--TTTATCATAGTG--GGTGT-ATT 1967
Query 1746 GTGGAGAAGAAGGTGTTACAAAAATGCA-ATGGACAAAGAGCTTAGGGGTTTAGATCTTC 1804
|||| || |||| || ||||||||| | || ||||||||||| |||||| |||||||||
Sbjct 1968 CTGGAAAAAAAGGCGTGACAAAAATG-ATATTGACAAAGAGCTAAGGGGTCTAGATCTTC 2026
Query 1805 AGACTGAAACTTTTACTCTTCGACATATAAAAGCAGCTACTAATAACTTT-GATGCAGCA 1863
| |||| |||||||||||| || || ||||||||||| ||| |||| ||| |||| | ||
Sbjct 2027 AAACTGGAACTTTTACTCTACGGCAGATAAAAGCAGCCACTGATAA-TTTCGATGTAACA 2085
Query 1864 A-ACAAGATTGGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGTGTTATCAGAGGGGAG 1922
| | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2086 AGA-AAGATTGGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGAATTATCTGAGGGGA- 2143
Query 1923 GA-TGATTGCGGTTAAAAAATTGTCTTCAAAGTCCAATCAAGGAAGCCGGGAGTTTGTGA 1981
| | ||||| |||||| || ||||| |||| || | || |||| || |||||||| |
Sbjct 2144 AATTAATTGCAGTTAAACAACTGTCTGCAAAATCGAGGCAGGGAAATCGCGAGTTTGTAA 2203
Query 1982 ATGAGTTAGGCATGATCTCATCTCTACAACATCCAAATCTTGTGAAGCTATATGGATCTT 2041
||||| |||| ||||||||| |||| |||||||| |||||||||||||||||||||| ||
Sbjct 2204 ATGAGATAGGAATGATCTCAGCTCTTCAACATCCGAATCTTGTGAAGCTATATGGATGTT 2263
Query 2042 GTG-TGGAGAAGAAGCAACTGATATTGGTCTACGAGTATTTGGAGAACAACTGTCTTTCT 2100
||| || || | || ||| |||||||||| || ||||| ||||||||||||||||| |||
Sbjct 2264 GTGTTGAAGGA-AACCAATTGATATTGGTGTATGAGTACTTGGAGAACAACTGTCTATCT 2322
Query 2101 CGTGC-TCTA-TT--------TG-GA--TCCAGACTGAAATTAGAATGGCCAACGAGGAA 2147
|| || | || || || || || ||||||||| |||| ||| |||| |||||
Sbjct 2323 CGAGCGT-TATTTGGAAAGGATGAGAGTTCTAGACTGAAACTAGACTGGTCAACAAGGAA 2381
Query 2148 GAAGATTTGTTTGGGCATAGCTAAAGGACTAAAATTTCTCCACGAAGAATCT-GCGATCA 2206
|||||||| |||||| ||||| || ||||| | ||||||||| ||||||||| | ||| |
Sbjct 2382 GAAGATTTTTTTGGGGATAGCCAAGGGACTGACATTTCTCCATGAAGAATCTAG-GATAA 2440
Query 2207 AGATTGTGCACAGGGATATAAAGGCGAGCAACGTGTTGCTAGATGACGATCTCAACGCCA 2266
||||||| ||||| ||||||||||| ||||| ||||| || ||| | ||||||||||| |
Sbjct 2441 AGATTGTACACAGAGATATAAAGGCAAGCAATGTGTTACTCGATAAGGATCTCAACGCTA 2500
Query 2267 AAATCTCTGACTTTGGTTTGGCAAAGCTGAATGATGATGAGAA-CACACACATCAATACT 2325
|||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 2501 AAATTTCTGACTTTGGTTTGGCAAAGCTGAATGATGATG-GAAACACACACATCAGCACT 2559
Query 2326 CGTATCGCCGGAAC-ACCAGGATATATGGCTCCGGAATACGCCATGCGTGGTTATTTGAC 2384
||||| || ||||| | ||| ||||||||||| ||||| || ||||||||||| |||||
Sbjct 2560 CGTATTGCAGGAACTAT-AGGTTATATGGCTCCTGAATATGCAATGCGTGGTTACTTGAC 2618
Query 2385 TGAAAAAGCTGATGTTTATAGCTTTGGCGTCGTTGCCCTTGAAATTGTCAGTGGAAAGAG 2444
||||||||| |||||||||||||| ||||||||||| || ||||| || |||||||||||
Sbjct 2619 TGAAAAAGCGGATGTTTATAGCTTCGGCGTCGTTGCACTCGAAATCGTTAGTGGAAAGAG 2678
Query 2445 TAACTCAAACGTCAAACCAAGCGAGAACTTGGAGTGCCTTCTTGATCAGGCCTACGTTTT 2504
|||| ||||| | | |||| |||| |||| | | |||||||||| ||| ||||||||
Sbjct 2679 TAACACAAACTTTAGGCCAACCGAGGACTTTGTTTACCTTCTTGATTGGGCTTACGTTTT 2738
Query 2505 GCAAGACA-AGGGATGCTTACTAGA-CTTGGTTGATCCAGTGCTAGATTCAGCCTACTCA 2562
|||||| | ||| | |||||||||| || |||||||||| | ||| |||| ||||||
Sbjct 2739 GCAAGAGAGAGGAA-GCTTACTAGAGCT-GGTTGATCCAACGTTAGCCTCAGATTACTCA 2796
Query 2563 AAAGAGGAAGCAATGGTGAT-CTTGAACGTGGCACT-ATTGTGCACTAACACGTCCCCGG 2620
|||||||||| ||| |||| || |||||||||| | || |||||||||| | || |||
Sbjct 2797 GAAGAGGAAGCCATGTTGATGCT-GAACGTGGCATTGAT-GTGCACTAACGCATCACCGA 2854
Query 2621 CGT-TAAGGCCAAAAATGTCGCAGGTCGTGAGTCTCCTCGAGGAAAAGGCCGCAATGAAA 2679
| | ||||||| | |||||||||||| ||||||||| | |||| ||| | || ||| ||
Sbjct 2855 C-TCTAAGGCCTACAATGTCGCAGGTGGTGAGTCTCATAGAGGGGAAGACAGCGATGCAA 2913
Query 2680 AACCTGTTGTCGGACCCAAACTTCTCAGCAGTGAACCCGAAGCT 2723
| || ||||||| || | ||||||| | || |||||||||||
Sbjct 2914 GAGTTGCTGTCGGATCCGAGCTTCTCAACGGTTAACCCGAAGCT 2957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141922281747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5