BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916653
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT2G10260.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 102 1e-20
> AT2G10260.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: Ulp1 protease family protein (TAIR:AT5G45570.1);
Has 598 Blast hits to 556 proteins in 152 species: Archae -
0; Bacteria - 266; Metazoa - 60; Fungi - 10; Plants - 112;
Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). |
chr2:3938527-3941240 FORWARD LENGTH=1644
Length=1644
Score = 102 bits (55), Expect = 1e-20
Identities = 136/172 (79%), Gaps = 18/172 (10%)
Strand=Plus/Plus
Query 1210 CCACACTTGACCACT-A-AACCTGAAATGG-CGAGACAATGCATGTTTTTGCGA-G-AAA 1264
|||||| |||||||| | || ||||||| || ||||| ||||||||| || | |
Sbjct 1387 CCACACATGACCACTGATAA--AGAAATGGTTGA-ACAATCCATGTTTTT--GATGCTTA 1441
Query 1265 TGATCCCTGCCATGATGAGTGCTGTGATACCTGA--CAACATACGTAAGAAGAG-TAATG 1321
|||||||||| ||| |||||||||| || || | | | ||||| |||||||| | ||
Sbjct 1442 TGATCCCTGCTATGTTGAGTGCTGTCATTCC-AATTC-AGATACGCAAGAAGAGCT-TTG 1498
Query 1322 CAAGGTTGGAAGTGAAAAGGATTACAAAGAAGGTATCTTTC-AATAAAGATC 1372
||| |||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1499 CAAAGTTGGAAGTGAAAAGGATTACAAAGAAGGTC-CTTGAGAATAAAGATC 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5