BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916653 Length=1575 Score E Sequences producing significant alignments: (Bits) Value AT2G10260.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 102 1e-20 > AT2G10260.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 598 Blast hits to 556 proteins in 152 species: Archae - 0; Bacteria - 266; Metazoa - 60; Fungi - 10; Plants - 112; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). | chr2:3938527-3941240 FORWARD LENGTH=1644 Length=1644 Score = 102 bits (55), Expect = 1e-20 Identities = 136/172 (79%), Gaps = 18/172 (10%) Strand=Plus/Plus Query 1210 CCACACTTGACCACT-A-AACCTGAAATGG-CGAGACAATGCATGTTTTTGCGA-G-AAA 1264 |||||| |||||||| | || ||||||| || ||||| ||||||||| || | | Sbjct 1387 CCACACATGACCACTGATAA--AGAAATGGTTGA-ACAATCCATGTTTTT--GATGCTTA 1441 Query 1265 TGATCCCTGCCATGATGAGTGCTGTGATACCTGA--CAACATACGTAAGAAGAG-TAATG 1321 |||||||||| ||| |||||||||| || || | | | ||||| |||||||| | || Sbjct 1442 TGATCCCTGCTATGTTGAGTGCTGTCATTCC-AATTC-AGATACGCAAGAAGAGCT-TTG 1498 Query 1322 CAAGGTTGGAAGTGAAAAGGATTACAAAGAAGGTATCTTTC-AATAAAGATC 1372 ||| |||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1499 CAAAGTTGGAAGTGAAAAGGATTACAAAGAAGGTC-CTTGAGAATAAAGATC 1549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77760644205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5