BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916655

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36000.1 | Symbols: LBD5 | LOB domain-containing protein 5 |...   370    4e-102
  AT2G19510.1 | Symbols: LBD8 | LOB domain-containing protein 8 |...   331    2e-90 


> AT1G36000.1 | Symbols: LBD5 | LOB domain-containing protein 5 
| chr1:13422554-13423028 FORWARD LENGTH=387
Length=387

 Score =  370 bits (200),  Expect = 4e-102
 Identities = 258/285 (91%), Gaps = 8/285 (3%)
 Strand=Plus/Plus

Query  1    ATGGAACCTCTAGGGAACCCTCGTCCTTACTCTGTATGTATCACCAGAAACAAAAATTGT  60
            |||||||||||||| |||| |||||||| ||| ||||||||||||| ||||| |||||||
Sbjct  14   ATGGAACCTCTAGGAAACCGTCGTCCTTGCTCCGTATGTATCACCAAAAACAGAAATTGT  73

Query  61   CCCCA-AAACTGCGAATATGCGA-AATATTTTCCATATAAATTGCAATGTCAATATGAAA  118
             |||| |  |||||||||||| | |||| ||||||||| |||||||| ||||||||||||
Sbjct  74   -CCCAGATTCTGCGAATATGC-AGAATACTTTCCATATGAATTGCAAAGTCAATATGAAA  131

Query  119  GTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATG-AGGCATGCTCCCGAA  177
            |||||||||||||||||||||| ||||||||||||| ||||||| || |||||||| |||
Sbjct  132  GTGCTAATGAATTGTTTGGCACACCAAATATCATTACGATGATGCAG-CATGCTCCTGAA  190

Query  178  GaaaaaaaaCAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACA-AAGGA  236
            |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |
Sbjct  191  GAAAAAAAACAAATGCTAGCAACTTCTATAATCATGGAAGGTAATGCTTGGACAGAAG-A  249

Query  237  TCCTATAAGTGGTGGATTCGGTGTGATGCAAAAGATCATGTGGAA  281
            |||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct  250  TCCTATAAGTGGTGGATTCGGTATGATTCAAAAGCTCATGTGGAA  294


> AT2G19510.1 | Symbols: LBD8 | LOB domain-containing protein 8 
| chr2:8453219-8453682 FORWARD LENGTH=380
Length=380

 Score =  331 bits (179),  Expect = 2e-90
 Identities = 251/285 (88%), Gaps = 8/285 (3%)
 Strand=Plus/Plus

Query  1    ATGGAACCTCTAGGGA-ACCCTCGTCCTTACT-CTGTATGTATCACCAGAAACAAAAATT  58
            |||||||| ||| ||| | | |||||||| || | ||||||||||||| ||| | |||||
Sbjct  12   ATGGAACCACTA-GGAGATCGTCGTCCTTGCTGC-GTATGTATCACCAAAAATAGAAATT  69

Query  59   GTCCCCA-AAACTGCGAATATGCGAAATATTTTCCATATAAATTGC-AATGTCAATATGA  116
            || || | |  ||||||||||||| |||| ||||||||| | |||| || |||| |||||
Sbjct  70   GT-CCTAGATTCTGCGAATATGCGGAATACTTTCCATATGAGTTGCGAA-GTCATTATGA  127

Query  117  AAGTGCTAATGAATTGTTTGGCACGCCAAATATCATTAAGATGATGAGGCATGCTCCCGA  176
            |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct  128  AAGTACTAATGAATTGTTTGGCACACCAAAGATCATTAAGATGATGAGGCATGCTCCTGA  187

Query  177  AGaaaaaaaaCAAATACTAGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAAGGA  236
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct  188  AGAAAAAAAACAAATGCTTGCAACTTCCATAATCATGGAAGGTAATGCTTGGACAAATGA  247

Query  237  TCCTATAAGTGGTGGATTCGGTGTGATGCAAAAGATCATGTGGAA  281
            |||| ||||||||||||| ||| || |||||||||||||||||||
Sbjct  248  TCCTGTAAGTGGTGGATTTGGTATGGTGCAAAAGATCATGTGGAA  292



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5