BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916656

Length=1131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19500.1 | Symbols: CKX2, ATCKX2 | cytokinin oxidase 2 | chr...   549    2e-155


> AT2G19500.1 | Symbols: CKX2, ATCKX2 | cytokinin oxidase 2 | chr2:8444204-8447355 
REVERSE LENGTH=1667
Length=1667

 Score =  549 bits (297),  Expect = 2e-155
 Identities = 353/379 (93%), Gaps = 7/379 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTAATCTTCGTCTAATAATCACAGTTTTGAT--TTGTTTATTCTCGAGCACCAAAT  58
            ||||||||||||||| |||| |||||   ||| ||    |||| |  | || ||||||||
Sbjct  55   ATGGCTAATCTTCGTTTAATGATCAC---TTTAATCACGGTTT-TAAT-GATCACCAAAT  109

Query  59   CATCAAACGTTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCCACTGATC  118
            ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  110  CATCAAACGGTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCTACCGATC  169

Query  119  CTTCCATCATCTCCGCCGCCTCTCATGACTTCGGGAACATAACCACCGTGACCCCCGGCG  178
            |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  170  CTTCCATCATCTCCGCAGCCTCTCATGACTTCGGAAACATAACCACCGTGACCCCCGGCG  229

Query  179  GCGTTATCTGCCCCTCCTCCTCCGCTGATATATCTCGTCTCCTCCAATACGCCGCGAACG  238
            |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct  230  GCGTAATCTGCCCCTCCTCCACCGCTGATATCTCTCGTCTCCTCCAATACGCCGCAAACG  289

Query  239  GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  290  GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT  349

Query  299  CGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTCTCACTGACGTGGTGGTTTCAAAAG  358
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  350  CGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTATCACTGACGTGGTGGTTTCAAAAG  409

Query  359  ACAAGAAGTATGCTGACGT  377
            |||||||||| ||||||||
Sbjct  410  ACAAGAAGTACGCTGACGT  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55471602225


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5