BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916660
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50410.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1177 0.0
> AT5G50410.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:20528199-20529827
REVERSE LENGTH=1038
Length=1038
Score = 1177 bits (637), Expect = 0.0
Identities = 730/774 (94%), Gaps = 9/774 (1%)
Strand=Plus/Plus
Query 4 TCGAGTGACGAAACCCTAGAAGATGAAAA-GAG--GCAGCAGCAATTGGAATCGGATGAA 60
||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 21 TCGAGTGACAAAACCCTAGAAGATGAAAAGGTGCAGCAGCAGCAATTGGAATCGGATGAC 80
Query 61 AAAATCTCAAACCCGAACCAGCGAACAGAGCCATCTCAAGAATGGGAGACAATGGCTCGA 120
|||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 81 AAAATCTCAAACACGAACCAACGAACAGAGCCATCTCAGGAATGGGAGACAATGGCTCGA 140
Query 121 GCTTGGGTCTCCGCTTTCCCCGATGCCAAAGCCGTTGTAAGCTCTGGCGAAGTGGAGACT 180
||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 141 GCTTGGGTCTCCGCTTTCCCCGACGCCAAAGCCGTTGTAAGCGCCGGCGAAGTCGAGACT 200
Query 181 TGGATCGGCACCAACTTAGATTCCTTACCGGCGGATCTCCGCCACATGCCTCGCTCTGAG 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 201 TGGATCGGCACCAACTTAGATTCCTTACCGGCGGATCTCCGTCACATGCCTCGCTCCGAG 260
Query 241 ATCGTAGATCGTCTCCTCTCAATCCAACATTACATGAGACCAACACCATCATCTGATCAA 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 ATTGTAGATCGTCTCCTCTCAATCCAACATTACATGAGACCAACACCATCATCTGATCAA 320
Query 301 AACGAGAAAAATGTGGAAGCAGATCAACAACATCCAGCTCGATTTCAGAGGACTGATCAG 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AACGAGCAAAATGTGGAAGCAGATCAACAACATCCAGCTCGATTTCAGAGGACTGATCAA 380
Query 361 TGGTTACCAGTGTATTCGTGGTTAGAGTCATTGGATCATGGAGAGTTGGTGAAATCTAAG 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 381 TGGTTACCAGTGTATTCGTGGTTAGAGTCATTGGATAATGGAGAGTTGGTGAAATCTAAG 440
Query 421 GATATTTCTGAGTGGCTTGATGCCAATCCTGAGGTTAAACAAGAACTTTCTTCTAGGCAT 480
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 441 GATATTTCTGAATGGCTTGATGCGAATCCTGAGGTTAAACAAGAACTTTCTTCTAGGCAT 500
Query 481 TCTCGTTATCATTTGACTCATTATGTCAAGAAATGTCATCTTAAGATACTTAAGAGGAAG 540
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 501 TCTCGTTATCATTTGACTCATTATGTCAAGAAATGTCATCTCAAGATTCTTAAAAGGAAG 560
Query 541 GAGAAGAAGGGATTAATCCGGCTAAGCCGAGCAACTGCCATGGAAGTTCACAAAGAATTT 600
||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||| |||
Sbjct 561 GAGAAGAAGGGATTAATCCGGCTGAGCAGAGCTACTGCAATGGAAGTTCACAAAGAGTTT 620
Query 601 GGCGAGAAACACC-TCGCTACGCTTTCTGCTGA-CCCAATGAGCAACATACCAAAAGACA 658
||||||||||||| | ||||||||||| ||||| |||| ||||||||||||| |||||||
Sbjct 621 GGCGAGAAACACCAT-GCTACGCTTTCGGCTGATCCCA-TGAGCAACATACCGAAAGACA 678
Query 659 GTGACCTTTACCGGACGAAACAGAAAGAAGCTAAACGCAGATTTGAGATCTTGGTCGAGC 718
||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 679 GTGACCTCTACCGCACAAAACAGAAAGAAGCTAAGCGCAGATTTGAGATCTTGGTTGAGC 738
Query 719 TCGAGAAGAGACTGGCTCCGCACTTTT-CAAAGCCTCGGATAGGAAACAAATGA 771
|||||||||||||||||||||| |||| |||||||||| |||||||||| ||||
Sbjct 739 TCGAGAAGAGACTGGCTCCGCA-TTTTGCAAAGCCTCGCATAGGAAACAGATGA 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5