BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916733

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51105.1 | Symbols:  | Protein of unknown function (DUF1278)...   303    6e-82


> AT5G51105.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr5:20777574-20778118 FORWARD LENGTH=545
Length=545

 Score =  303 bits (164),  Expect = 6e-82
 Identities = 234/267 (88%), Gaps = 8/267 (3%)
 Strand=Plus/Plus

Query  143  TTCCTAACCCTTTCCATCCAAACCCCGGTATGCCAGGAATG-CCCGACATGACCAAATGT  201
            |||| || || ||| | ||||  ||||||||| |||||| | |||||| ||| |||||||
Sbjct  156  TTCCAAATCCGTTCAAACCAAGTCCCGGTATGGCAGGAA-GTCCCGACTTGAGCAAATGT  214

Query  202  TGGTCAACAGTGATGGATTTGCCAGGATGCTTTCAAGAGATTCAACAAGCCGTAATGACC  261
            ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct  215  TGGTCAACAGTGATGGATTTGCCGGGATGCTTTGAAGAGATTCAACAAGCCGTAATGTCC  274

Query  262  GGCAAATTTGGCA-GCATCGGTCCAGCTTGTTGTAAAGCTTTCCTTGACGCTGAAGCTAA  320
            ||||||||| | | || | ||||| |||||||||||||||||||||||||||||||||||
Sbjct  275  GGCAAATTT-GAAGGCGTTGGTCCTGCTTGTTGTAAAGCTTTCCTTGACGCTGAAGCTAA  333

Query  321  CTGCACACCGAATCTTCCATTCAACCCGTTTTTCCCTCCTATGATTAAACAAAAATGCTC  380
            ||||  ||| |||||||||| |||||||||||||||||||||||| |||||  |||||||
Sbjct  334  CTGCTTACCAAATCTTCCATCCAACCCGTTTTTCCCTCCTATGATGAAACACCAATGCTC  393

Query  381  CAAAAATG-CT-GCTCCTCCCACCACC  405
            ||||| || || | |||||| ||||||
Sbjct  394  CAAAA-TGGCTAG-TCCTCCAACCACC  418


 Score =  156 bits (84),  Expect = 2e-37
 Identities = 123/141 (87%), Gaps = 6/141 (4%)
 Strand=Plus/Plus

Query  1    ATGTCGATCAAGAGTGTTGTTTCTCTCCTAGTGGTCGTATGCATCGCAGCCTGCGTTAAT  60
            |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct  59   ATGTCGATCAAGAGTGTTGTTTCTCTCCTAGTAGTTGTATGCATCGCAGCCTCCGTTAAT  118

Query  61   GCGCAGCTACCGCAGTTGCCCCCACTCCCATTCCCATTCCCGTTTCCAAATCCATTCCAG  120
            || |||||||||||||| |||||| ||  ||     ||||||||||||||||| ||| | 
Sbjct  119  GCTCAGCTACCGCAGTTTCCCCCAATC--ATG----TTCCCGTTTCCAAATCCGTTCAAA  172

Query  121  CCAAGTCCTGGTATGCCAGGA  141
            |||||||| |||||| |||||
Sbjct  173  CCAAGTCCCGGTATGGCAGGA  193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5