BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916754
Length=2685
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51350.1 | Symbols: | Leucine-rich repeat transmembrane pro... 4263 0.0
> AT5G51350.1 | Symbols: | Leucine-rich repeat transmembrane protein
kinase family protein | chr5:20867602-20870745 REVERSE
LENGTH=3070
Length=3070
Score = 4263 bits (2308), Expect = 0.0
Identities = 2566/2692 (95%), Gaps = 11/2692 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTCTTCTAAGCATAATAAACTCCGTTCTTGCTTTTATCTTTGCCTCTTCTTGACT 60
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 125 ATGGCGTCTTCTAAGCATAATAAACTCTGTTCTTTCTTTTATCTTTGCCTCTTCTTGACT 184
Query 61 TTAGTTGCAGC-G--GACCCTCAAACAGAATCTCTTCTCACTTTAAAATCTCAACTCACC 117
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TTAGTTGCAGCTGCTGAGCCTCAAACAGAATCTCTTCTCACTTTAAAATCTCAACTCACC 244
Query 118 GACAATTCCAACAGCTTAAAAGACTGGTTCATTATCACTCCTGGAGTTTCCGACAAAGTT 177
||||||| |||||||||||||||||||||||| | |||||||| |||||||||||| ||
Sbjct 245 GACAATTTCAACAGCTTAAAAGACTGGTTCATCAACACTCCTGAAGTTTCCGACAATCTT 304
Query 178 GTCGCTTGTTGTTCTTGGTCTGGTGTCCGATGTAACCAAAACTCAACTTCTGTTGTCTCC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTCGCTTGTTGTTCTTGGTCTGGTGTCCGATGTAACCAAAACTCAACTTCTGTTGTCTCC 364
Query 238 CTCGACCTCTCTTCCAAGAATCTCGCAGGGAGTTTGTCAGGGAAGGTGTTCCTCGTCTTC 297
|||| |||||||||||||||||||| |||||||| ||||| |||| |||||||||||||
Sbjct 365 GTCGATCTCTCTTCCAAGAATCTCGCTGGGAGTTTATCAGGCAAGGAGTTCCTCGTCTTC 424
Query 298 ACTGAACTTCTTGAACTCAACATCAGTGACAACTCGTTTTCAGGCGAGTTTCCGACTGAG 357
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 425 ACCGAACTCCTTGAACTCAACATCAGTGACAACTCGTTTTCCGGCGAGTTTCCGGCTGAG 484
Query 358 ATCTTCTTTAACTTGACCAATCTCAGAAGCCTTGACATTAGCCGAAACAACTTCTCCGGA 417
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 485 ATCTTCTTCAACATGACCAATCTCAGAAGCCTTGACATTAGCAGAAACAACTTCTCCGGA 544
Query 418 CGTTTTCCTGACGGTAACGGTGGTGGTGGCTCAAGTCTCAAGAATCTGATCCTTCTCGAC 477
||||| |||||||||||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 545 CGTTTCCCTGACGGTAAC---GGTGGTGACTCAAGTCTCAAGAATCTGATCTTTCTCGAC 601
Query 478 GCCTTGAGCAATAGCTTCTCCGGCCCATTACCGATCCATCTCTCTCAGTTAGAGAATCTC 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 602 GCCTTGAGCAATAGCTTCTCCGGTCCATTACCGATCCATCTCTCTCAGTTAGAGAATCTC 661
Query 538 AAGGTACTGAATCTCGCTGGAAGTTACTTCACTGGCTCGATTCCGAGTCAGTACGGATCT 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 662 AAGGTACTGAATCTCGCTGGGAGTTACTTCACTGGCTCGATTCCGAGTCAGTACGGATCT 721
Query 598 TTCAAGAATCTTGAGTTTCTTCATCTTGGTGGAAATTTACTAAGTGGGCACATACCACAA 657
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 722 TTCAAGAATCTTGAGTTTCTTCATCTTGGTGGGAATTTACTAAGTGGTCACATACCTCAA 781
Query 658 GAGCTTGGGAATCTCACAACTTTGACTCACATGGAGATTGGATATAACTCATATGAAGGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GAGCTTGGGAATCTCACAACTTTGACTCACATGGAGATTGGATATAACTCATATGAAGGA 841
Query 718 GTAATCCCTTGGCAAATAGGTTACATGAGTGAGCTCAAGTACCTCGACATTGCCGGAGCT 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 842 GTAATCCCTTGGGAAATAGGTTACATGAGTGAGCTCAAGTACCTCGACATTGCTGGAGCT 901
Query 778 AATCTCTCTGGCTTCTTACCAAAGCATTTCAGCAATCTCACAAAGCTTGAATCTTTGTTC 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AATCTCTCTGGCTTCTTACCAAAGCATTTCAGCAATCTCACAAAGCTTGAATCTTTGTTT 961
Query 838 CTCTTCAGGAACCATCTTTCTAGAGAAATCCCATGGGAGCTTGGACAAATCACTTCTCTT 897
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 962 CTCTTTAGGAACCATCTTTCTAGAGAAATCCCATGGGAGCTTGGAGAAATTACTTCTCTT 1021
Query 898 GTTAACTTAGACCTCTCAGACAACCATATCTCTGGAACCATACCAGAGAGTTTTTCAGGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GTTAACTTAGACCTCTCAGACAACCATATCTCTGGAACCATACCAGAGAGTTTTTCAGGT 1081
Query 958 TTGAAGAATCTCAGGCTTTTGAATCTTATGTACAATGAAATGAGTGGGACTCTCCCTCAA 1017
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1082 TTGAAGAATCTCAGGCTTTTGAATCTTATGTTCAATGAAATGAGTGGGACTCTCCCTGAA 1141
Query 1018 GTCATTGCTCAGCTACCTTCTTTGGATACTCTCTTTATATGGAACAATTACTTTTCTGGG 1077
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1142 GTAATTGCTCAGCTACCTTCTTTGGATACTCTCTTCATATGGAACAATTACTTCTCTGGG 1201
Query 1078 TCACTTCCCAAAAGCTTGGGGATGAACTCAAAGCTTAGATGGGTCGATGTTTCTACCAAC 1137
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 1202 TCACTTCCCAAAAGCTTGGGGATGAATTCAAAGCTTAGATGGGTGGACGTTTCCACCAAC 1261
Query 1138 AGTTTCGAAGGTGAAATCCCACAAGGTATTTGCTCAGGAGGTGTTCTTTTTAAGGTCATT 1197
|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 1262 AGTTTCCAAGGTGAAATCCCACAAGGTATTTGCTCAAGAGGTGTTCTTTTCAAGCTCATT 1321
Query 1198 CTATTCTCCAATAATTTCACTGGAACTCTGTCTCCATCACTCTCCAATTGTTCAACGCTT 1257
|| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1322 CTTTTCTCCAATAACTTCACTGGAACTCTGTCTCCATCTCTCTCAAATTGTTCAACGCTT 1381
Query 1258 GTTCGTATCCGGCTTGAAGATAATTCATTCTCTGGTGTGATCCCTTTTAGCTTTAGCGAG 1317
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1382 GTTCGTATCCGGCTTGAAGATAATTCATTCTCAGGTGTGATCCCTTTTAGCTTTAGCGAG 1441
Query 1318 ATTCCTGATATCTCATACATAGACCTCTCAAGAAACAAACTTACAGGAGGCATTCCTTTA 1377
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1442 ATTCCTGATATCTCATACATAGACCTCTCTAGAAACAAACTCACAGGAGGTATTCCTTTA 1501
Query 1378 GATATATCCAAAGCTACTAAACTTGACTACTTCAATATCTCTAACAACCCTGAGCTAGGA 1437
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1502 GATATATCCAAAGCTACAAAACTTGACTACTTCAATATCTCCAATAACCCTGAGCTAGGA 1561
Query 1438 GGGAAACTTCCACCGCAGATTTGGTCTGCGCCTCGTCTTCAGAACTTCTCTGCATCATCC 1497
|| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1562 GGCAAACTTCCACCGCATATTTGGTCTGCGCCTAGTCTTCAGAACTTCTCTGCATCATCA 1621
Query 1498 TGCAGTATCTCTGGTAGTCTCCCTGAGTTTGAATCCTGCAAAGCGATCACTGTTATTGAA 1557
||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 1622 TGCAGTATCTCTGGTGGTCTCCCTGTGTTTGAATCCTGCAAATCTATCACTGTTATTGAA 1681
Query 1558 TTGAGCAACAACAATATATCAGGGATGTTAACACCAACTGTTTCCACTTGTGGCTCTCTT 1617
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TTGAGCAATAACAATATATCAGGGATGTTAACACCAACTGTTTCCACTTGTGGCTCTCTT 1741
Query 1618 GAGAAGATGGATTTATCACACAATAACTTGAGTGGTTCCATCCCATCTGACAAAGTGTTT 1677
||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1742 AAGAAGATGGATTTGTCACACAATAACTTGAGAGGTGCCATACCATCTGACAAAGTGTTT 1801
Query 1678 CAATCAATGGGGAAACATGCGTACGAGGGCAATGCAAACCTCTGTGGGCTTCCTCTGAAA 1737
||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 1802 CAATCAATGGGGAAACATGCGTACGAGAGTAATGCAAACCTATGTGGGCTTCCTCTGAAG 1861
Query 1738 TCATGTTCAGCTTACAGCTCAAAGAAGCTTGTGTCTGTTCTAGTAGCTTGTCTAGTCTCT 1797
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1862 TCATGTTCAGCTTACAGCTCAAGGAAGCTTGTGTCTGTTCTGGTAGCTTGTCTAGTCTCT 1921
Query 1798 ATCCTGCTAATGGTAGTTGCAGCTTTGGCATTGTACTATATACGTCAAAGAAGTCAAGGT 1857
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1922 ATTCTGCTAATGGTAGTTGCAGCTTTGGCATTGTACTATATTCGTCAAAGAAGTCAAGGA 1981
Query 1858 CAATGGAAGATGGTGTCTTTCGCGGGACTCCCTCATTTCACAGCAGATGATGTTTTGAGG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 CAATGGAAGATGGTGTCTTTCGCGGGACTCCCTCATTTCACAGCAGATGATGTTTTGAGG 2041
Query 1918 AGCTTTGGTTCACCTGAACCTAGTGAAGCAGTTCCAGCTTCAGTGAGCAAAGCAGTTCTG 1977
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2042 AGCTTTGGTTCACCCGAACCTAGTGAAGCAGTTCCAGCTTCAGTGAGCAAAGCAGTTCTG 2101
Query 1978 CCAACAGGAATAACAGTCATAGTGAGAAAAATCGAATTGCAAGACAAGAAGAAGAGCGTT 2037
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 2102 CCAACAGGAATAACAGTCATAGTGAGAAAAATTGAGTTGCATGACAAGAAGAAGAGTGTT 2161
Query 2038 GTTCTGAACTTTTTAACGCAGATGGGGAATGCAAGACACGTAAATCTGGTGAGATTGCTG 2097
|| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2162 GTCCTGAACGTTTTAACGCAGATGGGGAATGCAAGACATGTAAATCTGGTCAGATTGCTC 2221
Query 2098 GGGTTTTGTTACAACAATCATCTTGTGTATGTGTTGTATGATAATAACCTGCATACC-GG 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2222 GGGTTTTGTTACAACAATCATCTTGTGTATGTGTTGTATGATAATAACCTGCATACCGGG 2281
Query 2157 --GACTCTAGCTGAGAAAATGAGGACAAAGAAGAAAGACTGGGC-AACTAAGAAGAGGAT 2213
|||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||
Sbjct 2282 ACGACTCTAGCTGAGAAAATGAAGACAAAGAAGAAAGA-TTGGCAAACTAAGAAGAGGAT 2340
Query 2214 CATCACTGGTGTTGCTAAGGGACTTTGCTTTCTTCACCATGAATGCTACCCTGCAATTCC 2273
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2341 CATCACTGGTGTTGCTAAGGGACTTTGCTTTCTTCACCATGAATGTTTGCCTGCAATTCC 2400
Query 2274 TCATGGAGATGTGAAGTCGTCTAATATATTATTCGATGACGATAAGATAGAGCCCTACTT 2333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2401 TCATGGAGATGTGAAGTCGTCTAATATATTATTCGATGACGATAAGATAGAGCCCTGCTT 2460
Query 2334 GGGTGAATTTGGGTTCAAATACATGCTACATTTGAACACAGATCAGATGAACGATGTAAT 2393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2461 GGGTGAATTTGGGTTCAAATACATGCTACATTTGAACACAGATCAGATGAACGATGTTAT 2520
Query 2394 AAGAGCGGAGCAGCAAAAGGACATTTACAACTTTGGAGAACTCATTTTGGAAATCTTAAC 2453
||||| |||| ||||||||||| | |||||||||||| |||| |||||||||||||||||
Sbjct 2521 AAGAGTGGAGAAGCAAAAGGACGTCTACAACTTTGGACAACTTATTTTGGAAATCTTAAC 2580
Query 2454 AAATGGTAAGCTGATGAATGCCGGCGGATTGATGATACAGAACAAGCCAAAGGATGTTCT 2513
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2581 AAATGGTAAGCTGATGAATGCCGGTGGATTGATGATACAGAACAAGCCAAAGGATGGTCT 2640
Query 2514 TCTACGAGAAGTATGCACAGAAAACGAAGTGGGTTCAAGTGATTTTAAACAAGGAGAAGT 2573
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2641 TCTAAGAGAAGTATACACAGAAAACGAAGTGAGTTCAAGTGATTTTAAACAAGGAGAAGT 2700
Query 2574 TAAAAGAGTTGTTGAGGTCGCACTTCTCTGCATAAGAAGTGACCAGTCTGACCGTCCTTG 2633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2701 TAAAAGAGTTGTTGAGGTCGCACTTCTCTGCATAAGAAGTGACCAGTCTGACCGTCCTTG 2760
Query 2634 CATGGAAGATGCACTGAGGTTCTTGTCTGAAGCAGAGAATAGGTTTAAATAG 2685
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 2761 CATGGAAGATGCACTCAGGTTATTGTCTGAAGCAGAGAATAGGTTCAAATAG 2812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133343734494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5