BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916765
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5... 2104 0.0
AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4... 1764 0.0
> AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5:20892643-20897817
FORWARD LENGTH=2603
Length=2603
Score = 2104 bits (1139), Expect = 0.0
Identities = 1256/1313 (96%), Gaps = 6/1313 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATAAGATATCTGCCCATTTCTTTGGCAACAACAGCTTTGAGCATTGTGGGTTTA 60
|||| ||||| |||| ||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 222 ATGGGGATAACATATTTGCACATTTCCGTGGCAACAACAGCTTTGAGCTTTGTGGGTTTA 281
Query 61 CAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATTATCACCAAGAAC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 282 CAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATAATCACCAAGAAC 341
Query 121 GTTTCTTTA-GGAGATTCTGAGAATACCCTTGAGCTGCTTTTGAGTTCTCACACTACAAT 179
|||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 342 ATTTCTTTAGGGA-ATTCTGAGAATACCCTTGAGCTTCTTCTGAGTTCTCACACTACAAT 400
Query 180 TGCCTTGCTGGCAAGTTTTGTACTCAATGTCTACATTCTTCTTGTTCTTTCTCTCAAGAC 239
||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 401 TGCATTGCTGGCAAGTTTTGTTCTCAATATCTACATTCTTCTTGTTCTTTCTCTCAAGAC 460
Query 240 TCTGTTTTTTGGGGATCTATATGCCATTGAAACTAGAAAGCTGGTGGAAAGGCTTGCCAA 299
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 461 TCTGTTTTTTGGAGATCTATATGCCATTGAAACTAGAAAACTGGTGGAAAGGCTTGCCAA 520
Query 300 TTACATCATTTACAAGGGCACTTTTCTTCCATTGGTGGTTCCACCAACAGTATTTCAGGG 359
||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct 521 TTACATCATTTACAAGGGCACTTTTCTGCCATTCGTGGTTCCACGAACAGTATTTCAGGG 580
Query 360 GGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGCTTTGGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 GGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGCTTTGGC 640
Query 420 TAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCTACTCCTTGGACATACTTTCG 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 641 TAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCGACTCCTTGGACATACTTTCG 700
Query 480 TGTGTATTCAGCACTGTTCATGGTTCTCTCTGCTGATTTGTGCTGGATAAAGCTTTCCCT 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 701 TGTGTATTCAGCACTGTTCATGGTTCTCTCTACTGATTTGTGCTGGATAAAGCTTTCCCT 760
Query 540 TATGATATACAGTACAATTGGTTCATCTGTGTATTTATTGTTACTTTTTGAGCCATGCAG 599
||||||||||| |||| ||||||| ||||| |||||| |||||||||||||||||||| |
Sbjct 761 TATGATATACAATACAGTTGGTTCGTCTGTCTATTTACTGTTACTTTTTGAGCCATGCGG 820
Query 600 TGTAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGATATGTG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TATAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGATATGTG 880
Query 660 GATCAACCACTTTGCAGTCAAGAATTCAGATTGCCAAAGATCAAAGTTTTATGATTCTAT 719
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 881 GATCAACCACTTAGCAGTCAAGAATTCAGATTGCCAGAGATCAAAGTTTTATGATTCCAT 940
Query 720 GACAGCAGGCTCATTATTGGAATGGAAAGGCCTCCTCAACCGGAATCTGGGTTTCTTCCT 779
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 941 GACAGCAGGCTCGTTATTGGAATGGAAAGGCCTCCTCAACCGAAATCTTGGTTTCTTCCT 1000
Query 780 AGATATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTTGTGGCTCCATGG 839
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1001 AGACATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTGGTGGCTCCATGG 1060
Query 840 AATGGCCTTCCATCTGATGGATGCAGTTTTGTTTCTCAACATACGTGCCTTGCTAAGTGC 899
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1061 AATGGCCTTCCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCCTTGCTAAGTTC 1120
Query 900 AATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTCTAGGTGCTCTTCATGC 959
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1121 AATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTTTAGGTGCTCTTCATGC 1180
Query 960 AGCTCTTCCTGATGCAACTTCAGAAGAGCTACGGGCAT-ATGATGACGAATGTGCTATAT 1018
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1181 AGCTCTTCTTGATGCAACTTCAGAAGAGCTACGGG-ATTATGATGACGAATGTGCTATAT 1239
Query 1019 GTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCATCTTGGAT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1240 GTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCATCTTGGCT 1299
Query 1079 GCCTGCGATCATGGTTAGATCAAGGTTTAAATGAGGTTTACTCCTGTCCTACATGCCGTA 1138
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1300 GCCTACGATCATGGTTGGATCAAGGTTTAAATGAGGTTTACTCTTGTCCTACTTGCCGTA 1359
Query 1139 AGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCTAGCAGAGGAGAAGTATCAA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1360 AGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCTAGCAGAGGAGAAGTCTCAA 1419
Query 1199 GCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAATAATTCTGTGCATGCCCTAACCA 1258
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1420 GCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAACAATTCTGTGCATGCACTAACCA 1479
Query 1259 CTGGGATGTTTCCAACTGAGACGCCAAATT-CAACTGAAAGTGATCCGTGGAG 1310
|||| ||||||||||||||||||||||||| || | ||||||||||| |||||
Sbjct 1480 CTGGAATGTTTCCAACTGAGACGCCAAATTTCACC-GAAAGTGATCCTTGGAG 1531
Score = 682 bits (369), Expect = 0.0
Identities = 408/427 (96%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 1309 AGGAATTCAGGA-CTGGATCAAAGCTGGCTGCAAACATGGTCAGATCAGGGTGTTGATGT 1367
||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1584 AGGAATTCA-GAGGTGGATCCAAGCTGGCTGCAAACATGGTCAGATCAGGGTGTTGATGT 1642
Query 1368 TGTGGGTCCCTCTACAGGCTCCAGATCCGTTGGGCTGGGGCAGGTTCAATTGATGATGAG 1427
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TGTGGGTTCCTCTGCAGGCTCCAGATCCGTTGGGCTGGGGCAGGTTCAATTGATGATGAG 1702
Query 1428 GCATCTTACATCTGTTGGGGAAGATTATACTCAGACTGCACTTGACGATGCTTCTTGGGG 1487
||||||| ||||||| ||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 1703 GCATCTTGCATCTGTAGGGGAAGGTTCTGCTCAGACTACACTTGACGATGCTTCTTGGGG 1762
Query 1488 TCTCTGGCCAATGAATCCTGCGCAAGCATCGACTTCATCTACATATGTTCCTCCTGGTGC 1547
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1763 TCTCTGGCCAATGAATCCTTCGCAAGCATCGACTTCATCTACATATGTTCCTCCTGGTGC 1822
Query 1548 TGGGGGAAGAACAGGTGGTCTGCATCTGAGAACTGTCTCCCGTGCAGCAAATAATATGGC 1607
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1823 TGGAGGAAGAACAGGTGGTCTGCATCTAAGAACTGTCTCCCGTGCAGCAAATAACATGGC 1882
Query 1608 GAGTATACAAGCTATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGCCTGATGAAAT 1667
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 GAGTATACTAGCAATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGCCTGATGAAAT 1942
Query 1668 AATTTTCCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACAATCTTCTCCA 1727
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 AATTTTTCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACAATCTTCTCCA 2002
Query 1728 GATGTGA 1734
|||||||
Sbjct 2003 GATGTGA 2009
> AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:12924059-12929156
FORWARD LENGTH=2609
Length=2609
Score = 1764 bits (955), Expect = 0.0
Identities = 1477/1727 (86%), Gaps = 43/1727 (2%)
Strand=Plus/Plus
Query 31 GCAACAACAGCTTTGAGCATTG-TGGGTTTACAAGTCTGGACGGAGTTGTCTCTTGATAG 89
||| |||||||| | ||| ||| ||| || ||||||||||| ||||||||||| |||||
Sbjct 418 GCATCAACAGCTCTCAGCTTTGTTGGACTT-CAAGTCTGGACAGAGTTGTCTCTCGATAG 476
Query 90 ACTTAGAGCTGATGGGATTATCACCAAGAACGTTTCTTTAGGAGATTCTGAGAATACCCT 149
|||| |||| |||||| | || |||||||| ||||||||||||| |||||| || | ||
Sbjct 477 ACTTCGAGCAGATGGGCTGATTGCCAAGAACATTTCTTTAGGAGACTCTGAGCATGCGCT 536
Query 150 TGAGCTGCTTTTGAGTTCTCACACT-ACAATTGC-CTTGCTGGCAAGTTTTGTACTCAAT 207
|||||||||| || | ||| | | || ||||| | |||| ||| |||||| ||||||
Sbjct 537 TGAGCTGCTTCTGGGCTCTTA-TTTCACTATTGCGC-TGCTTACAAATTTTGTGCTCAAT 594
Query 208 GTCTACATTCTTCTTGTTCTTTCTCTCAAGACTCTGTTTTTTGGGGATCTATATGCCATT 267
|| || |||||||| || ||||||||||||||||| |||||||| ||| |||||| ||
Sbjct 595 GTGTATATTCTTCTGGTACTTTCTCTCAAGACTCTATTTTTTGGAGATTTATATGATGTT 654
Query 268 GAAACTAGAAAGCTGGTGGAAAGGCTTGCCAATTACATCATTTACAAGGGCACTTTTCTT 327
||||| | |||| ||||||| | ||||||||||| ||||| |||||||| || |||||
Sbjct 655 GAAACCAAAAAGTTGGTGGAGCGACTTGCCAATTATATCATATACAAGGGTACGTTTCTA 714
Query 328 CCATTGGTGGTTCCACCAACAGTATTTCAGGGGGTCCTATGGACAATCTGGTTGACTGTT 387
||| ||||| |||| |||||| |||||||||| || || |||||| | ||||||||||||
Sbjct 715 CCACTGGTGATTCCCCCAACAATATTTCAGGGTGTACTGTGGACAGTTTGGTTGACTGTT 774
Query 388 CTGTGTACTCTAAAGATGTTTCAAGCTTTGGCTAGAGATCGGCTTGATCGATTGAATGCA 447
|| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 775 CTATGTACTTTAAAGATGTTTCAAGCTTTGGCTAGAGACCGGCTTGAACGATTGAATGCA 834
Query 448 TCTCCTTCTTCTACTCCTTGGACATACTTTCGTGTGTATTCAGCACTGTTCATGGTTCTC 507
|||||||||||||| |||||||||||||||||||||||||||| || ||| |||| |||
Sbjct 835 TCTCCTTCTTCTACACCTTGGACATACTTTCGTGTGTATTCAGTGCTATTCTTGGTCCTC 894
Query 508 TCTGCTGATTTGTGCTGGATAAAGCTTTCCCTTATGATATACAGTACAATTGGTTCATCT 567
|||| |||| ||| ||||||||| ||||||||||||| ||||| |||||||||||| ||
Sbjct 895 TCTGTTGATATGTTCTGGATAAAACTTTCCCTTATGACATACAATACAATTGGTTCCGCT 954
Query 568 GTGTATTTATTGTTACTTTTTGAGCCATGCAGTGTAGCTTTTGAGACCTTGCAGGCGTTG 627
|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 955 GTGTATCTGTTGTTACTTTTTGAGCCATGCAGTATAGCTTTTGAGACCTTGCAGGCGCTG 1014
Query 628 TTGATTCACGGGTTTCAACTGCTTGATATGTGGATCAACCACTTTGCAGTCAAGAATTCA 687
|| ||||| |||||||| ||||| ||||||||||| |||||||| ||||| ||||| |||
Sbjct 1015 TTAATTCATGGGTTTCAGCTGCTAGATATGTGGATTAACCACTTAGCAGTTAAGAACTCA 1074
Query 688 GATTGCCAAAGATCAAAGTTTTA-TGATTCTATGACAGCAGGCTCATTATTGGAATGGAA 746
|| ||||||||||| ||| |||| |||||||||||||||||||||| | |||||||||||
Sbjct 1075 GACTGCCAAAGATCTAAG-TTTATTGATTCTATGACAGCAGGCTCACTGTTGGAATGGAA 1133
Query 747 AGGCCTCCTCAACCGGAATCTGGGTTTCTTCCTAGATATGGCTACCTTGGTAATGGCCCT 806
||||||||||||||| || || ||||||||||| || |||||||| ||||||||||| ||
Sbjct 1134 AGGCCTCCTCAACCGTAACCTTGGTTTCTTCCTGGACATGGCTACTTTGGTAATGGCACT 1193
Query 807 CGGTCATTATTTGCACATCTT-GTGGCTCCATGGAATGGCCTTCCATCTGATGGATGCAG 865
||||||||||||||||| || |||||| ||||| || ||||| |||||| |||||||||
Sbjct 1194 AGGTCATTATTTGCACAT-TTGGTGGCTGCATGGCATTGCCTTTCATCTGGTGGATGCAG 1252
Query 866 TTTTGTTTCTCAACATACGTGCCTTGCTAAGTGCAATTTTGAAACGAATAAAAGGATACA 925
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTTTGTTTCTCAACATACGTGCATTGCTAAGTGCAATTTTGAAACGAATAAAAGGATACA 1312
Query 926 TCAAACTGAGAGTAGCTCTAGGTGCTCTTCATGCAGCTCTTCCTGATGCAACTTCAGAAG 985
| ||||| ||| ||||||| |||||||| |||||||| || |||||||||||||| ||||
Sbjct 1313 TTAAACTAAGAATAGCTCTGGGTGCTCTCCATGCAGCCCTCCCTGATGCAACTTCTGAAG 1372
Query 986 AGCTACGGGCATATGATGACGAATGTGCTATATGTCGGGAACCAATGGCTAAGGCTAAAA 1045
|| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1373 AGTTAAGGGCATATGATGATGAATGTGCTATATGTCGGGAACCTATGGCTAAGGCTAAAA 1432
Query 1046 GACTTCACTGCAACCACCTTTTTCATCTTGGATGCCTGCGATCATGGTTAGATCAAGGTT 1105
| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1433 GGCTTCACTGCAACCACCTTTTCCATCTTGGATGCCTGCGATCCTGGTTGGATCAAGGTC 1492
Query 1106 TAAATGAGGTTTACTCCTGTCCTACATGCCGTAAGCCTCTTTTTGTTGGTAGAACTGAAA 1165
||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1493 TAAATGAGGTTTATTCTTGTCCTACATGTCGTAAGCCTCTTTTCGTTGGTAGAACTGAAA 1552
Query 1166 GTGAGGCGAATCCTAGCAGAG-GAGAAGTATCAAGCGATGAACACTTAGCCCGTCAATTT 1224
||||| ||| ||| ||| || | ||||| ||||| ||||| || ||||||||||| ||
Sbjct 1553 ATGAGGTGAACCCTCGCACAGTG-GAAGTCTCAAGTGATGAGCAGTTAGCCCGTCAGCTT 1611
Query 1225 GAGAGACAAAATAATTCTGTGCATGCCCTAACCACTGGGATG-TTTCCAACTGAGACGCC 1283
|| |||||||| ||| |||| ||||| ||| ||||||| || ||||| ||||| |||
Sbjct 1612 GAAAGACAAAACAATCCTGTACATGCACTAGCCACTGG-ATTATTTCCTGCTGAGGTGCC 1670
Query 1284 AAATTCAA-CTGAAAGTGATCCGTGGAGGAATTCAGGACTGGATCAAAGCTGGCTGCAAA 1342
| |||| | |||| |||| | | |||||||| |||| |||||| ||| |||||||| |
Sbjct 1671 AGATTCTGTC-GAAAATGATACTTCGAGGAATTTAGGATTGGATCCAAGTTGGCTGCAGA 1729
Query 1343 CATGGTCA-GATCAGGGTGT-TGATGTTG-TGGGTCCCTCTAC-AGGCT-CCAG-ATCCG 1396
|||||||| | ||||||| | |||||| | ||| ||| ||||| | || |||| | | |
Sbjct 1730 CATGGTCAAG-TCAGGGT-TCTGATGTCGCTGG-TCCTTCTACCA--CTTCCAGGA-CAG 1783
Query 1397 TTGGGCTGGGGCAGGTTCA-ATTGATGATGAGGCATCTTACATCTGTTGGGGAA-GATTA 1454
|||| || |||| |||||| || |||||||||||||||| |||||||||| ||| | | |
Sbjct 1784 TTGGACTTGGGCGGGTTCAGAT-GATGATGAGGCATCTTGCATCTGTTGGCGAAAGCT-A 1841
Query 1455 TACTCAGACTGCACTTGACGATGCTTCTTGGGGTCTCTGGCCAATGAATCCTGCGCAAGC 1514
| |||| |||||||||||||||||| ||||| |||| ||||| ||||| ||| | |||||
Sbjct 1842 TGCTCAAACTGCACTTGACGATGCTGCTTGGAGTCTATGGCCGATGAACCCTTCACAAGC 1901
Query 1515 ATCGACTTCATCTACATA-TGTTCCTCCTGGTGCTGGGGGAAGAACAGGTGGTCTGCATC 1573
||| ||||| |||||| | ||| ||||||||| ||| ||||| ||||||||||||||||
Sbjct 1902 ATCCACTTCTTCTACA-ACTGTACCTCCTGGTAATGGTGGAAGGACAGGTGGTCTGCATC 1960
Query 1574 TGAGAACTGTCTCC--CGTGCAGCAAAT-AATA--TGG-CGAGTATACAAGCTATGGCCG 1627
|||||||||| || | | | ||||| || | | | | ||||| |||||||||||
Sbjct 1961 TGAGAACTGTATCAAACACG-A-CAAATGAA-AGCTTAACAAATATACTAGCTATGGCCG 2017
Query 1628 AGACAGTAAGGGAAGTCCTCCCACATGTGCCTGATGAAATAATTTTCCAGGACCTGCAAA 1687
||||||| ||||||||| | ||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 2018 AGACAGTGAGGGAAGTCATGCCACACGTGCCCGATGAAATTATTTTCCAGGACCTGCAGA 2077
Query 1688 GAACAAATTCTGTTTCTGTTACAGTGAACAATCTTCTCCAGATGTGA 1734
||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 2078 GAACAAACTCTGTTGCTGTTACCGTGAACAATCTTCTCCAGATGTGA 2124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5