BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916775
Length=2121
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51540.1 | Symbols: | Zincin-like metalloproteases family p... 3422 0.0
> AT5G51540.1 | Symbols: | Zincin-like metalloproteases family
protein | chr5:20932031-20936413 FORWARD LENGTH=2290
Length=2290
Score = 3422 bits (1853), Expect = 0.0
Identities = 2032/2121 (96%), Gaps = 2/2121 (0%)
Strand=Plus/Plus
Query 1 ATGTGGAAGCTGACGCGGCGATTGCAGCCGTGTATCAATTCGACCCGATGGTTAATCCGA 60
||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 41 ATGTGGAAGCTGACGCGGCGACTGCAGCCGCATATCAATTCGACCCGATGGTTAGTCCGA 100
Query 61 AATTTCCGGCGTGGAGAAGCTGGAAACGCCACCGGTCTCTACGGTTTCGATCATCTTAAA 120
||||||||| ||||| ||||||| |||||||||||||||| || ||||||||||| |||
Sbjct 101 AATTTCCGGAATGGAGGAGCTGGAGACGCCACCGGTCTCTATGGCTTCGATCATCTAAAA 160
Query 121 ACGGCTAAAGGGTTTCAGAGATTCGTTGCTGATGCCATTGAAAGGTCTGGTGAGTTGGTG 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 ACAGCTAAAGGGTTTCAGAGATTCGTTGCTGATGCCATTGAAAGGTCTGGTGAGTTGGTG 220
Query 181 AGCTACATATCAGGAATGCCTTCGTCTCCAGAGATTATCAAAGCCATGGATGAGATTTCC 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 221 AGCTACATATCAGGAATGCCTTCGTCTCCAGAGATTATTAAAGCCATGGATGAGATTTCA 280
Query 241 GACACTGTTTGTTGTGTTGTTGACTCTGCTGAACTCTGTAGACAAACTCATCCTGACAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GACACTGTTTGTTGTGTTGTTGACTCTGCTGAACTCTGTAGACAAACTCATCCTGACAGG 340
Query 301 GAATTTGTTGAGGAGGCGAATAAAGCAGCAATTGAAATGAATGATTATCTACATCATCTT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAATTTGTTGAGGAAGCGAATAAAGCAGCAATTGAAATGAATGATTATCTACATCATCTT 400
Query 361 AACACGAACCATACTTTGTATGCTGCGGTGAAAAAAGCAGAGCAAGATTCTAACTTGCTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AACACGAACCATACTTTGTATGCTGCGGTGAAAAAAGCAGAGCAAGATTCTAACTTGCTT 460
Query 421 ACCAAAGAAGCAAGTAGGACCGCACATCACCTCCGAATGGACTTTGAAAGGGGTGGCATT 480
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 461 ACCAAAGAAGCAAGTAGGACCGCACATCACCTTCGAATGGACTTTGAACGGGGTGGCATT 520
Query 481 CATTTAGACCCTGAGAAGCTAGATAAAGTGAATAACTTAACAACCAACATATTTCAGTTA 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CATCTAGACCCTGAGAAGCTAGATAAAGTGAATAACTTAACAACCAACATATTTCAGTTA 580
Query 541 TGCAGGGAGTTCAGTGAAAATATAGCTGATAATCCCGGACATGTTGATATATTTCCAGCA 600
|||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 581 TGCAGGGAGTTCAGCGAAAATATTGCTGATGATCCAGGACATGTTGATATATTTCCAGGA 640
Query 601 TCACGCATCCCTCGACATCTGCATCATCTCCTCAACCCTACCTACCGATCCACTTCAGGG 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 641 TCACGCATCCCTCGACATCTGCATCATCTTCTCAACCCTACCTACCGATCCACTTCAGGG 700
Query 661 GGCTCAAGAGGGTCTACGAGATCAGCACATAAGTCGAAACAGAA-GGGATTTCGAATAAA 719
||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 701 GGCTCAAGAGGGTCTACAAGATCAGCGCATAAGTCGAAACAGAAAGGG-TTTCGAATAAA 759
Query 720 TACTGATCCACGAACCCTTTCTTCCATTTTGCAGTGGACATCAGACGAAGAGGTTAGAAA 779
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 760 TACTGATCCACGAACCGTTTCTTCCATTTTGCAATGGACATCAGACGAAGAGGTTAGAAA 819
Query 780 AATGGTATATATCCAAGGGAACTCTGTTCCTCATGCGAATCACGGAGTTCTTGAGAAGCT 839
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 820 AATGGTATACATCCAAGGGAACTCTGTTCCTCATGCAAATCACGGAGTTCTTGAGAAGCT 879
Query 840 TATTACTGCACGCCATGAGCTTTCCCAGATGATGGGGTGTAATTCTTACGCTGACTTTAT 899
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 880 TATTGCTGCACGCCATGAGCTTTCCCAGATGATGGGGTGTAATTCTTATGCTGACATTAT 939
Query 900 GGTCGAGCCAAACCTAGCAAAATCCCCAAAGGTTGTGACATCCTTCCTACAAGAGCTGAG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 940 GGTCGAGCCAAACCTAGCAAAATCCCCAAAGGTTGTGACATCCTTCCTACAAGAACTGAG 999
Query 960 CAAGACAGTCAAACCAAAGGCGGATGAAGAATTCATAGCCATTAGAGACTTTAAAAGAGA 1019
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1000 CAAGACAGTCAAACCGAAGGCGGACGAAGAATTCATAGCCATTAGAGACTTTAAAAGAGA 1059
Query 1020 GAAATGTGGTAATCCATCTGCAGAATTAGAGCCATGGGATGAAACTTACTACACTTCAAT 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1060 GAAATGTGGTAATCCATCTGCAGAGTTAGAGCCATGGGATGAAACTTACTACACTTCAAT 1119
Query 1080 GATGAAATCCTCTGTCAATGATGTGGACACCGCTGTTGTAGCATCATATTTTCCTCTGCC 1139
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1120 GATGAAATCCTCCATCAATGATGTGGACACTGCTGTTGTAGCATCATATTTTCCTCTGCC 1179
Query 1140 ACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATAC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATAC 1239
Query 1200 TGTTCCTCTCGCGCCAGGTGAATCTTGGCACCCAGATGTGCTTAAAATGTCTCTTCATCA 1259
| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1240 TATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCA 1299
Query 1260 CCCGGACGAGGGAGATCTCGGATATCTTTACCTTGACTTGTACTCGAGAAAAGACAAGTA 1319
|||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| ||||||
Sbjct 1300 CCCGGACGAGGGTGATCTCGGGTATCTTTACCTTGACTTATACTCAAGAAAAGGCAAGTA 1359
Query 1320 CCCTGGATGTGCCAGCTTTGCAATCAGAGGAGGACGCAAGATTTCTGAGACAGAATACCA 1379
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 CCCTGGGTGTGCTAGCTTTGCAATCAGAGGAGGACGCAAGATTTCTGAGACAGAATACCA 1419
Query 1380 ACTCCCTGTTTTGGCTCTCGTTTGCAATTTCTCGCGAGCTCGTGATTCATCAGTCGTGAA 1439
||| |||||| | ||||| ||||||||||| ||||||||| ||||||| ||| | |||||
Sbjct 1420 ACTTCCTGTTATAGCTCTTGTTTGCAATTTTTCGCGAGCTTGTGATTCGTCAATTGTGAA 1479
Query 1440 GCTTAATCACTCTGAAGTTGAAGTTTTGTTCCACGAATTCGGACATGCTCTTCACTCTCT 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GCTTAATCACTCTGAAGTTGAAGTTTTGTTCCACGAATTCGGACATGCTCTTCACTCTCT 1539
Query 1500 GCTCTCACGAACGGATTACCAACATTTTTCTGGTACCAGGGTGGCTCTTGACTTAGCAGA 1559
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1540 GCTCTCACGAACGGATTACCAACATTTTTCTGGTACCCGGGTGGCTCTTGACTTGGCAGA 1599
Query 1560 AATGCCTTCAAATCTATTTGAGTACTATGCATGGGACTATCGCCTCCTGAAGAGATTTGC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 AATGCCTTCAAATCTATTTGAGTACTATGCATGGGACTATCGCCTCCTGAAGAGATTTGC 1659
Query 1620 CCGTCATCACTCAACCGGTGAGACAATACCCGAGAAGTTGGTTAACTCGTTACAAGGTGC 1679
||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1660 CCGTCATTACTCGACCGGTGAGACAATACCCGAGAAGTTGGTTAATTCGTTACAAGGTGC 1719
Query 1680 GAGGAACATGTTTGCAGCAACTGAAATGCAACGCCAGGTGTTTTATGCGCTGATTGACCA 1739
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1720 GAGGAACATGTTTGCAGCAACGGAAATGCAACGCCAGGTCTTTTATGCGCTGATCGACCA 1779
Query 1740 AATGCTGTTCGGGGAACAACCGGAGACAGCAAGAGACGTGAGTCACCTCGTGGCTGAACT 1799
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1780 AATGTTGTTCGGGGAACAACCAGAGACAGCAAGAGATGTGAGTCACCTCGTGGCTGAACT 1839
Query 1800 GAAACGGCAACACACTAGCTGGAACCATGTCGAAGGAACACATTGGCATATTCGATTCAG 1859
||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 1840 GAAACGGCAGCACACTAGCTGGAACCATGTTGAAGGAACACATTGGTATATCCGATTCAG 1899
Query 1860 TCACCTACTTAACTATGGAGCAGGGTACTACAGCTACTTATACGCCAAATGCTTTGCATC 1919
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1900 TCACCTACTTAACTATGGAGCAGGGTACTATAGCTACTTATACGCTAAATGCTTTGCATC 1959
Query 1920 AACGATATGGCAATCAATATGCGAAGAAGATCCGCTTTCGTTGAACACAGGAACATTGCT 1979
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1960 GACGATATGGCAATCAATATGTGAAGAAGATCCGCTTTCGTTGAACACAGGAACATTGCT 2019
Query 1980 GAGAGAGAAGTTCTTCAAACATGGAGGAGCCAAAGATCCAGCTGAGCTGCTCACCGATCT 2039
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2020 GAGAGAGAAGTTCTTCAAACATGGAGGAGCCAAAGATCCAGCTGAGCTACTTACCGATCT 2079
Query 2040 AGCAGGCAAAGAGATCATTAGTGTTCATGGTGAAGGCATAATCCCTGCAACCACATACCT 2099
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 2080 AGCAGGGAAAGAGATCATTAGTGTTCATGGTGAAGGCATAGTTCCTGCAACCACGTATCT 2139
Query 2100 TTTAAATGAGCTTAGACTATA 2120
|||||| ||||||||||||||
Sbjct 2140 TTTAAACGAGCTTAGACTATA 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105170141775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5