BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916784
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51670.1 | Symbols: | Protein of unknown function (DUF668) ... 2233 0.0
> AT5G51670.1 | Symbols: | Protein of unknown function (DUF668)
| chr5:20993537-20995644 FORWARD LENGTH=1607
Length=1607
Score = 2233 bits (1209), Expect = 0.0
Identities = 1357/1429 (95%), Gaps = 8/1429 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCTTGAAACTTTCCTAATAAAACTCAAAAACGCTATTTCCTCCAAACCAACTTCT 60
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGGCTCTCGAAACTTTTCTAATAAAACTCAAAAACGCTATTTCCTCCAAACCAACTTCT 83
Query 61 CGTCGACCTCTCCGATCACCTCCTCCGATCA-CAACCACCACTTCCTCCGTCGGCGTTTT 119
|||||||| | ||||||| |||||||||| | |||||||||||||||||||||| || ||
Sbjct 84 CGTCGACCACACCGATCATCTCCTCCGAT-ATCAACCACCACTTCCTCCGTCGGAGTATT 142
Query 120 ATCGTTCGAAGTGGCACGTGTCATGACCAAactcctccatctcactcactctcttaccga 179
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 143 ATCGTTCGAAGTAGCACGTGTCATGACCAAACTCCTACATCTCACTCACTCTCTCACCGA 202
Query 180 ctccaatctcctcact-ctccgagaccactctctTTCCTTAGAAGGTCTAACCAAAATCG 238
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TTCCAATCTCCTCACTCCT-CGAGACCACTCTCTTTCCTTAGAAGGTCTAACCAAAATCG 261
Query 239 TTAACGGCGACGAAACTTTCCACCTCAGCCTTGTATGTGCTGAGCTCGCCGATAGCCTCG 298
| |||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 262 TCAACGGCGACGAAACATTCCACCTCAGCCTCGTTTGTGCTGAGCTCGCAGATAGTCTCG 321
Query 299 CCCACGCAGCTAACTCTGTTTCAAGACTGAGCCACCGCTGCACCACGGCCAGCCTCCGTT 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 322 CCCACGCAGCTAACTCTGTTTCAAGACTGAGCAACCGCTGCACCACGGCCAGCCTCCGTT 381
Query 359 CTTTCCACCGCTTATTCCATGAATTTGCCGACATGGGTCGTGACCCTCATGGCTGGGTCA 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 382 CTTTCCACCGCTTATTCCATGAATTTGCCGACATGGGTCGTGACCCTCATGGATGGGTCA 441
Query 419 TGAACTGCAAAGACGCAGAAGCTAAGAACAAGAAAATCGAAAGATACGTGAGTGTGACGA 478
||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 442 TGAACTGTAAAGACACAGAAGCTAAAAACAAGAAAATCGAAAGATACGTGAGCGTGACGA 501
Query 479 CAGCTTTGTATAGAGAGATGGAAGAAATGACGATGTTAGAGAACTCTTTGA-GAAAACAA 537
||||||||||||||||||||||||||||| |||| |||||||||||| | | ||||||||
Sbjct 502 CAGCTTTGTATAGAGAGATGGAAGAAATGGCGATATTAGAGAACTCTCT-ACGAAAACAA 560
Query 538 AGTTCACAGATTGGGATCGAATTCGAAGAAGAAGACGACTTCGAGAACAAGAAAGATGTA 597
|||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 561 AGTTTACAGATTGGGATCGAATTCGAAGAAGAAGAAGACTACGAGAACAAGAAAGATGTT 620
Query 598 ATGAAAGTGATAGATCTACAGAACAAGATTGAGAGACAGAAACAACATGTCAAGTATCTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ATGAAAGTGATAGATCTACAGAACAAGATTGAGAGACAGAAACAACATGTCAAGTATCTA 680
Query 658 AAAGACAGATCTCTATGGAACAAAAGCTTCGACACTGTCGTGTTGATTCTCGCCAGATCG 717
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AAAGACAGATCTCTCTGGAACAAAAGCTTCGACACTGTCGTGTTGATTCTCGCCAGATCG 740
Query 718 GTATTCACAGCACTCGCTAGACTCAAATCCGTCTTCTCCTCCGCCGCAGCCACTGGCTAC 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 741 GTATTCACAGCACTCGCTAGACTCAAATCCGTCTTCTCCTCCGCCGCAGCCACTGGGTAC 800
Query 778 ATGGG-CCACACCGTCGTGtcttctctccctcgctcgctctcttcttcttcttcctctAT 836
|||| || ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 801 ATGGTTCCG-ACCGTCGTGTCTTCTCTCCCTCGTTCTCTCTCTTCTTCTTCTTCCTCTAT 859
Query 837 GAATCTTGTTCACCCTAGCCCAAACGACGAGGAGAGAGACAAAACGGCGTCGTCATCTGC 896
|||||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||
Sbjct 860 GAATCTTGTTCACCCTAGCCCAAACGACGAAGAGAGAGACAAGACGACGACGTCTTCTGC 919
Query 897 GTTTCTTGAAGAAAGCTCAAGACTTTTGAAACCTCCGGAGACAACTCTCGGCGGAGCTGG 956
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 920 GTTTCTTGAAGAAAGCTCAAGACTATTGAAACCACCGGAGACAACTCTCGGCGGAGCTGG 979
Query 957 TGTAGCGCTTCACTACGCGAATCTGATAGTAGTAATGGAGAAAATGATAAAGCAACCTCA 1016
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 980 CGTGGCGCTTCACTACGCGAATCTGATAGTAGTAATGGAGAAGATGATAAAGCAACCTCA 1039
Query 1017 GCTTGTAGGTCTTGACGCGAGAGACGATCTGTATTCAATGTTACCGGCGAGTGTGAGATC 1076
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1040 GCTTGTAGGTCTTGACGCGAGAGACGATCTGTATTCAATGTTACCGGCAAGTGTGAGATC 1099
Query 1077 GTCTCTCAGGTCAAGACTAAAAGGAGTTGGTTTTTCGGCGACAGACGGTGGCTTAGCGAC 1136
||| || |||||||| ||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 1100 GTCACTTAGGTCAAGGCTAAAAGGAGTTGGTTTCACGGCGACGGACGGTGGTTTAGCGAC 1159
Query 1137 AGAGTGGAAGGCGGCGTTAGGTCGGATCTTACGGTGGTTGTTACCATTGGCTCAAAATAT 1196
|||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1160 GGAGTGGAAGGCGGCTTTAGGTCGGATCTTACGGTGGTTGTTACCATTGGCGCAGAATAT 1219
Query 1197 GATTAGGTGGCAGAGTGAGAGAAGCTTCGAGCAGCAACACATGGCGACGGCAGCGAATAG 1256
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1220 GATTAGGTGGCAGAGTGAGAGAAGCTTTGAGCAGCAACACATGGCGACGGCAACGAATAG 1279
Query 1257 TCAGAACAGAGTGATGTTAGTTCAAACACTTGTGTTTGCAGATAAAGTTAAGACAGAAGC 1316
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1280 TCAGAACAGAGTGATGTTAGTTCAAACACTAGTGTTTGCAGATAAAGTTAAGACAGAAGC 1339
Query 1317 AGCCATAACAGAGCTTCTTGTTGGATTGAATTACATCTGGAGATTCGAAAGAGAGATGAC 1376
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1340 AGCCATAACAGAGCTTCTTGTTGGGTTGAATTACATCTGGAGATTCGAAAGAGAGATGAC 1399
Query 1377 TGCGAAAGCTCTCTTTAATCTACAGTCTCCTCCTACTAATTACAGCTAA 1425
|||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1400 TGCGAAAGCTCTGTTTAATCTACAGTGTCCTCCTACTAATTACAGCTAA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5