BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916790

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51730.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   712    0.0  


> AT5G51730.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:21011418-21013657 FORWARD LENGTH=1246
Length=1246

 Score =  712 bits (385),  Expect = 0.0
 Identities = 450/481 (94%), Gaps = 5/481 (1%)
 Strand=Plus/Plus

Query  1    GCTAAAGCAGATACCAATACTTGTAAAAAAGAGAGCAGCAGTAATGTTTCTAGCAAGGAA  60
            |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  382  GCTAAAACAGATACCAATACTTGTAAAAAAGAGAGCAGCCGTAATGTTTCTAGCAAGGAA  441

Query  61   TCTGATGTACTGGAGAAAGAAACCCTAAAACGAACATTACGTCCTTGCTCTTCTGATAGG  120
            ||||||||| || |||||||||||||| ||||||| |||| | ||| ||||| |  || |
Sbjct  442  TCTGATGTAGTGAAGAAAGAAACCCTAGAACGAACGTTACCTACTTACTCTT-T--TAAG  498

Query  121  CCTCTTACAAAGACTGCTGAGGTAGGCGAGAGAGTCTTATTCATTCCAAAACAAGGGGGG  180
              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  499  AATCTTACAAAGACTGCTGAGGTAGGCGAGAGAGCCTTATTCATTCCAAAACAAGGGGGG  558

Query  181  AGATATGATGGTGGCACGATTTTCGTAAAGGGATATGATTCTTCGCTTGGTGAGAATGAT  240
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  559  AGATATGATTGTGGCACGATTTTCGTAAAGGGATATGATTCTTCGCTTGGTGAGAATGAT  618

Query  241  ATCGCGAGAGCATTGCTTGAACATTTCAGTCCATGTGGAATGATCTCAAAAATTTATTTT  300
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  619  CTCGCGAGAGCATTGCTTGAACATTTCAGTCCATGTGGAATGATCTCAAGAATTTATTTT  678

Query  301  CAAACAAATGACGCCGGTGCAGCTGTCTTAAAACATGTTTTCATTGAAATGTTACACGGC  360
            ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||
Sbjct  679  CAAACAAATGACGCCGGTGAAGCTGTCTTAAAACATGTGTTCATTGTAATGTTACAAGGC  738

Query  361  ACAGAGGACGCTTTAAAACTTAATGGAAGTGACATGGGAGGATGCAATCTTGAAGTTCAT  420
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  739  ACAGAGGACGCTTTAAAACTTAATGGTAGTGACATGGGAGGATGCAATCTTGAAGTTCAT  798

Query  421  GACGCT-CAAGAGAGAGACGAATACTATATCAATCGTGAAGTGAGTGGTGGTCCTTTTAT  479
            |||||| || ||||||||||||| |||| |||||  |||||||||||||||||| |||||
Sbjct  799  GACGCTACA-GAGAGAGACGAATTCTATGTCAATTATGAAGTGAGTGGTGGTCCGTTTAT  857

Query  480  C  480
            |
Sbjct  858  C  858



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5