BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916799
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 905 0.0
> AT5G51790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:21039762-21040594 FORWARD
LENGTH=615
Length=615
Score = 905 bits (490), Expect = 0.0
Identities = 591/636 (93%), Gaps = 21/636 (3%)
Strand=Plus/Plus
Query 1 ATGAATCCTTCTAACAATCCTAAAAAGACAAGGCACCAGATCAGTCATATGCCTCAAGAA 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAATCCTTCTAACAATCCTAAAAAGACAAGGCACCAG---AGTCATATGCCTCAAGAA 57
Query 61 AGAGATGAAACGAAGAAGGAGAAGAAGCTTCTCCACCGCAACATCGAACGACAAAGAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGAGATGAAACGAAGAAGGAGAAGAAGCTTCTCCACCGCAACATCGAACGACAAAGAAGA 117
Query 121 CAAGAAATGGCCATCCTTTTCGCCTCTCTTCGTAGTCAGCTACCTCTAAAATACATCAAG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 CAAGAAATGGCGATCCTTTTCGCCTCTCTTCGTAGTCAGCTACCTCTAAAATACATC-A- 175
Query 181 GCTCTTTCTTCGCAGGGAAAGAGAGCCATGTCAGATCATGTAAACGGAGCAGTAAATTTC 240
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 176 -------------AGGGAAAGAGAGCCATGTCAGATCATGTAAACGGAGCAGTAAGTTTC 222
Query 241 ATCAAAGACACGCAAACACGGATAAAAGATCTCTCCTCTAGAAGAGACGAGCTAATGAGA 300
|||||||||||||||||| ||||||||||||||||| | |||||||||||||||| | ||
Sbjct 223 ATCAAAGACACGCAAACAAGGATAAAAGATCTCTCCGCAAGAAGAGACGAGCTAAAGCGA 282
Query 301 GAGATTGGTGACCCCACTAGTCGAACTGGATCCGGATCTGGATCTGGCTCAAGTAGATCG 360
|||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||
Sbjct 283 GAGATTGGTGACCCTACTAGTCTAACTGGATCCGGATCCGGATCTGGATCAAGTAGATCG 342
Query 361 GAACCAGCTAGTGTCATGGTGCAACAGTGCGTGAGCGGCTTCAAGGTGGTTGTGAGCAGC 420
||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||
Sbjct 343 GAACCAGCTAGTGTCATGGTGCAACCGTGTGTGAGCGGCTTCGAGGTGGTTGTGAGCAGC 402
Query 421 TCAGCGTCGTCAGGTCTTGAGGCTTGGCCACTCTCAAGAGTTCTTGAAGTTCTTCATGAA 480
| | | | |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 403 TTA--G-CATCAGGTCTCGAGGCTTGGCCACTCTCAAGAGTTCTTGAAGTTCTTCACGGG 459
Query 481 CAAGGACTTGAAGTCATCAGCTCTTTAACCGCACGAGTCAACGAGAGGCTCATGTACACT 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 460 CAAGGACTTGAAGTCATCAGCTCTTTAACAGCACGAGTCAACGAGAGGCTCATGTACACT 519
Query 541 ATACAAGTCGAGGTAAATAGCTTTGATTGCTTCGACTTAGCTTGGTTGCAGCAGAAGCTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATACAAGTCGAGGTAAATAGCTTTGATTGCTTCGACTTAGCTTGGTTGCAGCAGAAGCTA 579
Query 601 ATTGAGGAATTAGTACTTTCCACGACCAGGCACTGA 636
|||||| | ||||||||||||||||| |||||||||
Sbjct 580 ATTGAGCAGTTAGTACTTTCCACGACTAGGCACTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5