BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916806
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51850.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2185 0.0
> AT5G51850.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G62170.1);
Has 384 Blast hits to 375 proteins in 79 species: Archae -
0; Bacteria - 14; Metazoa - 135; Fungi - 31; Plants - 92; Viruses
- 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:21079252-21081578
FORWARD LENGTH=2040
Length=2040
Score = 2185 bits (1183), Expect = 0.0
Identities = 1606/1798 (89%), Gaps = 78/1798 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGACTGCCGCATATTCGATGACGG---T--C----ACGGTGGTGGCCGCGGT 51
||||||||||||||| |||| ||||||||||| | | | |||||||||||||||
Sbjct 168 ATGGGAAGAGACTGCGGCATGTTCGATGACGGCCATGGCAGTGAAGGTGGTGGCCGCGGT 227
Query 52 GGAGCCTTCTCTTCCTCAAGGTCAAAGAAAACAGCAAATGGATGCATGGCTGCTTTTTTC 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 228 GGAGCCTTCTCTTCCTCAAGGTCAAAGAAAACAGCAAATGGATGCATGGCTGCTTTTTAC 287
Query 112 CACTTATTTGATTTTCAACATTTTTACTTTCACTCTCATCATCACCTCACCATTGATTCT 171
|||||||||| | || | ||| ||||||| |||||||||||||||
Sbjct 288 CACTTATTTG---------A---TT-C--TCA---TCATCAT---CTCACCATTGATTCT 326
Query 172 CCTTCAAGTTCTAAAGGCTTGAAGTTGATAGAAGAGACTCTGCCATCAACAACTTACAAA 231
|||||||| || ||||||||||||||||| |||||| |||| ||||||||||| ||||||
Sbjct 327 CCTTCAAGGTCAAAAGGCTTGAAGTTGATGGAAGAGTCTCTACCATCAACAACCTACAAA 386
Query 232 GACAAACAAAGTTT-GAACATTCCAGTAAGCATGAGAGTGAGAACAGAGACAGGGACAAA 290
|||||| ||| ||| ||||||||||||| |||||||||||| |||||| |||||||||||
Sbjct 387 GACAAAGAAA-TTTCGAACATTCCAGTAGGCATGAGAGTGAAAACAGATACAGGGACAAA 445
Query 291 GAGTTCAAGACTCAGAGCTCTAGCGACTGATACTTCAACTTCTTCATCTGAAATCTGTAA 350
||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||
Sbjct 446 GAGTTCAAGACTCAGAGCTCTTGTGACTGATAGTTCCACTTCTTCATCTGAAATCTGTAA 505
Query 351 CTCACCAGGAAGCAAAACACCAAACTTGGTGGCTAGACTAATGGGTCTTGATCTTCTTCC 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CTCACCAGGAAGCAAAACACCAAACTTGGTGGCTAGACTAATGGGTCTTGATCTTCTTCC 565
Query 411 TGACAAAACTGACCTAAACCATTCACTGTCAGATCTTCATACAATGTCAAGTCATCATAT 470
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 566 TGATAAAACTGACCTTAACCATTCACTGTCAGATCTTCATACCATGTCAAGTCATCATAT 625
Query 471 CACAAGCCATAGACTTTCCAAGAAAGGCACACGATCTTTACCGGTGAGCCCTAGAATCTC 530
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 626 CACAAGCCATAGACTTTCCAAGAAAGGCACACGATCTTTACCGGTTAGCCCTAGAATCTC 685
Query 531 CTCTGCTCGGAAATCGGATTTCGACATTCATCGCCTCTCTCTTCAGCTAAACAAAGAGAA 590
||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 686 CTCTGCTCGGAAATCTGATTTCGACATTCATCGCCTCTCTCTTCAGCTGAACAGAGAAAA 745
Query 591 AGAGTTTGGATGTTCAAAGCTGAAACAAGATCAAGAGGAGAGTCAAGAGGAGATTCATAG 650
||||||||| |||||| ||||||| |||| ||||||||||||| | | ||
Sbjct 746 AGAGTTTGGGCGTTCAAGGCTGAAAGAAGACCAAGAGGAGAGTC--------A--C--AG 793
Query 651 TCCGAGAGATTACGCGAGGCAGATAGTTAAACAAATCAAAGAGAGAGTCGTCACTAGAAG 710
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 794 TCCAAGAGATTACGCGAGGCAGATAGTTAAACAAATCAAAGAGAGAGTCGTCACAAGAAG 853
Query 711 AGTCGTCGGTATGGATATAACAAACTCGGTGAAGAACAGAGAAGCAAGACCATCACATGA 770
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 854 AGTCGTCGGTATGGATATAACAAACTCGGTGAAAAACAGAGAAGCAAGACCATCACACGA 913
Query 771 GCTTAGAAGAGACACAACAGTTTCTTGTTCACCAAGAACTAGGTTTTCAGATAAAGAGAA 830
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 914 GCTTAGAAGAGACACAACAGTTTCTTGTTCACCAAGAACTAGGTTTTCAGAGAAAGAGAA 973
Query 831 CAAACCAAGCACCAGTCACAAACCTAATTCCTCATCTTCTTCCAGACCAGAACCGATCGT 890
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 974 CAAACAAAGCACCAGTCATAAACCTAATTCATCATCTTCTTCCAGACCAGAACCGATCAT 1033
Query 891 TCAGAAGCCAAAGCCAACAACAGCAATTCTTGATTCAGTGTCAAAAGCCTCTGGAGAGAA 950
|||||||||||||||||| || | | | | | | | || |||||||||
Sbjct 1034 TCAGAAGCCAAAGCCAAC-AC--C-A-----G--TGA-T-T-------CT-TGGAGAGAA 1072
Query 951 ACAGAGCAAGGACAGAGTAAAACAAAGGCAACTAAAACCAATCAACCTATGCAAGAAGGC 1010
||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1073 ACAGAGCCAGAACAGAGTAAAACAAAGGCAACTAAAACCCATCAACCTGTGCAAGAAGGC 1132
Query 1011 AGAGAGTGAAACAAAACGTCCCATAAACCCTTCTCCTACATCAGATATTCGAAACAGGAA 1070
||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1133 AGAGACTGAAACAAGACGTCCCATAAAGCCTTCTCCAACATCAGATATTCGAAACAGGAA 1192
Query 1071 GCGAGAGGCTTTCTTGTCTGAATCGAGAGACGTGAAAGCCAAGCCTTTACACAAG---AA 1127
||||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 1193 GCGAGAGACTTTCTTGTCTGATTCTAGAGACGTGAAAGCCAAGCCTTTACACAAGATCAA 1252
Query 1128 GAAGTTCAAGAAAATACCAAAGTCAAATGATCTTGAAAACATCTCTGCCACAAGACCTCC 1187
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GAAGTTTAAGAAGATACCAAAGTCAAATGATCTTGAAAACATCTCTGCCACAAGACCTCC 1312
Query 1188 TCATAAACAGATTAACGAAAGAGATCGACTAATATCGAATGAAGTAGCATCGATTCGCTC 1247
|||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 1313 TCATCAACAGATTAACGAAAGAGAGCGACTAATATCGAATGAAGCAGCATCGATACGCTC 1372
Query 1248 TAGTTTGATGCACAAAATCGAGAAGACTAGTCCACAAGTAGCGAGGAATCAAAAATTAGA 1307
||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 1373 TAGTTCGATGCACAAAACCGAGAAGAATAGTCCACAAGTAGCGAGGAATCACAAATTCGA 1432
Query 1308 CGATGCTGCCACTGGAATCGATTCTGAACAAGACTACATCACAAGAATATTGAATCTTGT 1367
|||||| ||||||| |||| |||||||||||||||| |||| ||||||| |||||||||
Sbjct 1433 CGATGCAGCCACTGAAATCAATTCTGAACAAGACTATATCATAAGAATAATGAATCTTGC 1492
Query 1368 GGGAATCAAGAATGACACATCAACAACAATGCTAGATCCTTCGATTTTCCACAAACTGGA 1427
||||||||||| |||| || ||| ||||||| |||| ||||||||||| |||||| ||
Sbjct 1493 GGGAATCAAGAGTGACTCA-CAAG--CAATGCTCGATCTTTCGATTTTCCGCAAACTAGA 1549
Query 1428 GCAGTTTGGAGATTATCCATCAGGAAGATTGGTTTT-GCGATGCAATCGGAAGCTACTGT 1486
||| |||||||||||||||||||||| ||||| | | | |||||||||| | |||| |||
Sbjct 1550 GCATTTTGGAGATTATCCATCAGGAACATTGGCTCTAG-GATGCAATCGTAGGCTATTGT 1608
Query 1487 TTGATCTAGTGAACGAGGTTCTGATTGAAAACGTGGCGAAAAAACGCGAAAACTATCCGG 1546
| ||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| ||
Sbjct 1609 TCGATCTAGTGAACGAGATTCTGATTGAAACCGTGGCGAAACGACGCGGAAACTATCAGG 1668
Query 1547 GACCGGAGCTAATCAGCGAGCTTTGTTCCGCTGTTCCGAGATATAGTAGTAAGTGTTGTC 1606
|| ||||||||||||||||||| ||||||||||| |||||||||||| |||||||| ||
Sbjct 1669 GATCGGAGCTAATCAGCGAGCTCTGTTCCGCTGTAGCGAGATATAGTACTAAGTGTTATC 1728
Query 1607 CCCTTCCTGAAGAGACTGCTTTAATGGACGTGAAACATCTTGTagagaagaagaag---c 1663
| |||||||||||| ||||||| | |||||||||| |||| |||||||||||||| |
Sbjct 1729 CAGTTCCTGAAGAGATTGCTTTAGTAGACGTGAAACGTCTTCTAGAGAAGAAGAAGAAGC 1788
Query 1664 ttgaagaggaaggagaagagatcattgcagagattgagcgggagaTCATAGACAAGCTCG 1723
||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |
Sbjct 1789 TTGAAGAGGAAGGAGAAGAGATCATCGTAGAGATTGAGCGGGAGATCATAGACGCGCTTG 1848
Query 1724 TGCGAGAAACTTGGTCTGAATTGAGTCTTAACCAGAGA-CTAAGCAAAACGACGTCGG 1780
|||||||||||| ||| ||||| ||||||||| ||||| | || ||||||||||||||
Sbjct 1849 TGCGAGAAACTTTGTCCGAATTAAGTCTTAACAAGAGATCAAA-CAAAACGACGTCGG 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5