BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916807
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51870.3 | Symbols: AGL71 | AGAMOUS-like 71 | chr5:21085462-... 826 0.0
AT5G51860.1 | Symbols: | K-box region and MADS-box transcripti... 339 2e-92
> AT5G51870.3 | Symbols: AGL71 | AGAMOUS-like 71 | chr5:21085462-21088004
REVERSE LENGTH=914
Length=914
Score = 826 bits (447), Expect = 0.0
Identities = 493/515 (96%), Gaps = 4/515 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGAGGGAAGATTGAGATCAAGAAGATTGAGAACGTGACGAGCAGACAAGTCACG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 ATGGTGAGAGGGAAGATCGAGATCAAGAAGATTGAGAACGTGACGAGCAGACAAGTCACG 141
Query 61 TTTTCGAAGCGAAGGAGCGGTCTATTTAAGAAGGCTCATGAGCTTTCGGTTCTATGCGAT 120
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTCTCGAAGCGAAGAAGCGGTCTATTTAAGAAGGCTCATGAGCTTTCGGTTCTATGCGAT 201
Query 121 GCACAAGTCGCCGCCATTGTCTTCTCTCAGAGTGGAAGATTACACGAATACTCTAGCTCC 180
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 202 GCTCAAGTAGCCGCCATTGTCTTTTCTCAGAGCGGAAGATTACACGAATACTCTAGCTCC 261
Query 181 GAGATGGAGAAGATTATAGAAAGATATGACAAGTTTACG-AATGCCTTGTATGTGGCAGA 239
||||||||||||||||||| ||||||| |||||||| | |||||||| |||||||||||
Sbjct 262 CAGATGGAGAAGATTATAGATAGATATGGCAAGTTTA-GTAATGCCTTCTATGTGGCAGA 320
Query 240 GAGGCCCCAAATAGAACGATACTTGCAGGAGCTGAAGATGGAAA-TGAATAGAATGGTGA 298
|||||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 321 GAGGCCTCAAGTAGAACGATACTTGCAGGAGCTGAAGATGGAAATTG-ATAGAATGGTGA 379
Query 299 AGAAGATTGATCTTCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGT 358
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAAAGATTGATCTCCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGT 439
Query 359 GTTCAGTGACAGAACTTCAAGAGATAGACACTCAAATTGAGAAAAGCCTTCGTATTGTCA 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 440 GTTCAGTGACAGAACTTCAAGAGATTGACACTCAAATTGAGAAAAGCCTTCGTATTGTCA 499
Query 419 GGTCCAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGG 478
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GGTCAAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGG 559
Query 479 AGCTCTTGAACGAGAGAAAAAGGCTGCGTGAAGAG 513
||||||||||||||||||||||||||| |||||||
Sbjct 560 AGCTCTTGAACGAGAGAAAAAGGCTGCTTGAAGAG 594
Score = 137 bits (74), Expect = 1e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 512 AGGGTAAAACTGAAGGTGGTTGCAGTACCAAACATTCATCAGAGGTTGAAACCGACCTAT 571
||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 653 AGGGTAATACTGAAGGTGGTCACAGAACCAAACATTCATCAGAGGTTGAAACCGACCTAT 712
Query 572 TTATTGGATTGCCCGTGACTCGGCTATAA 600
|||| ||||||||||||||||||||||||
Sbjct 713 TTATCGGATTGCCCGTGACTCGGCTATAA 741
> AT5G51860.1 | Symbols: | K-box region and MADS-box transcription
factor family protein | chr5:21081844-21084427 REVERSE
LENGTH=783
Length=783
Score = 339 bits (183), Expect = 2e-92
Identities = 402/506 (79%), Gaps = 22/506 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAGAGGGAAGATTGAGATCAAGAAGATTGAGAACGTGACGAGCAGACAAGTCACG 60
||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct 148 ATGGTGAGAGGAAAGATCGAAATCAAGAAGATTGAGAACGTGACAAGTAGACAAGTCACG 207
Query 61 TTTTCGAAGCGAAGGAGCGGTCTATTTAAGAAGGCTCATGAGCTTTCGGTTCTATGCGAT 120
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 208 TTTTCGAAGCGAAGGAGTGGTCTCTTTAAGAAGGCTCATGAGCTTTCTGTTCTATGTGAT 267
Query 121 GCACAAGTCGCCGCCATTG-TCTTCTCTCAGAGTGGAAGATTACACGAATACTCTAGCTC 179
|| ||||| || || || | |||||||||||| ||||||||| | |||| | |||||||
Sbjct 268 GCTCAAGTGGCAGCTAT-GATCTTCTCTCAGAAAGGAAGATTATATGAATTCGCTAGCTC 326
Query 180 CGAGATGGAG-AAGATTATAGAAA-GATATGACA-AGTTTACGA-AT-GCCTTGTATGTG 234
||| || || || | ||| || |||| | | ||| | || | | || | |||
Sbjct 327 CGATATC-AGGAACACGATA-AAGCGATACG-CTGAGTACAAGAGAGAGTATT-T-TGTT 381
Query 235 GCAGAGAGGCC-CCAAATAGAACGATACTTGCAGGAGCTGAAGATGGAAATGAAT-AGAA 292
||||| | | || | |||| | |||| |||||| ||| |||| ||||||| | | ||
Sbjct 382 GCAGAAACTCATCCTA-TAGAGCAATACGTGCAGGGGCTAAAGAAGGAAATGG-TGACAA 439
Query 293 TGGTGAAGAAGATTGATCTTCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGG 352
||||||| |||||||| | |||||||| ||| |||| ||| || |||| ||| ||||||
Sbjct 440 TGGTGAAAAAGATTGAAGTGCTTGAAGTCCATAACCGGAAGATGATGGGACAAAGTTTGG 499
Query 353 ATTCGTGTTCAGTGACAGAACTT-CAAGAGATAGACACTCAAATTGAGAAAAGCCTTCGT 411
|||| ||||| || | ||||||| || ||||||| ||| || || ||||||||||||| |
Sbjct 500 ATTCTTGTTCGGTAAAAGAACTTTCA-GAGATAGCCACACAGATAGAGAAAAGCCTTCAT 558
Query 412 ATTGTCAGGTCCAGAAAGGCTGAGTTATATGCAGATCAACTGA-A-AAAGCTAAAAGAAA 469
|| || || | ||||||||| ||||||||| |||| | || | | ||| ||||||| |
Sbjct 559 ATGGTTAGATTAAGAAAGGCTAAGTTATATGAAGATGAGCT-ACAGAAA-CTAAAAGCCA 616
Query 470 AGGAGAGGGAGCTCTTGAACGAGAGA 495
|||||||||| ||| | ||||||||
Sbjct 617 AGGAGAGGGAACTCAAGGACGAGAGA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5