BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916831

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52055.1 | Symbols:  | transposable element gene | chr5:2114...   241    3e-63


> AT5G52055.1 | Symbols:  | transposable element gene | chr5:21147955-21148865 
FORWARD LENGTH=911
Length=911

 Score =  241 bits (130),  Expect = 3e-63
 Identities = 171/190 (90%), Gaps = 5/190 (3%)
 Strand=Plus/Plus

Query  22   GTGTGTACTTGTGGA---GCAAAGGAAGCTTGGGAAAAATACGAAGAAGAGGAGTGCCTT  78
            ||||||| |||||||   || |||||||||| ||||||||||||| ||||| ||||||||
Sbjct  681  GTGTGTAATTGTGGAGGCGCTAAGGAAGCTTTGGAAAAATACGAACAAGAGAAGTGCCTT  740

Query  79   ACGCAGTTTTTGA-TCGGAGTTAATCAATCTCACAGGCAAACAATCGATATGATTTTGAC  137
            ||||||||||| |  ||| || || |||||||| ||||||||||||||||||||||||||
Sbjct  741  ACGCAGTTTTT-ACACGGTGTGAAGCAATCTCATAGGCAAACAATCGATATGATTTTGAC  799

Query  138  GAAGGAGCCTTTGCCTGATGTATATTGGGCTTTGAAACACCTAGAGTTTGAGGAATCTCA  197
            |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| 
Sbjct  800  GAAGGAGCCTTTGCCTGATGTATATTGGGCTTTGAAATGCCTAGAGTGTGAGGAATCTCG  859

Query  198  AAGACCAATT  207
            ||||||||||
Sbjct  860  AAGACCAATT  869



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5