BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916833
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family pr... 1081 0.0
AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774 RE... 845 0.0
> AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:26564188-26566853 FORWARD LENGTH=2378
Length=2378
Score = 1081 bits (585), Expect = 0.0
Identities = 652/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAATTTCAGAGAATGAA 60
|||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137
Query 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197
Query 121 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 180
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257
Query 181 ATTTGCCGTGATCTATTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 240
|||||||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1258 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1317
Query 241 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1318 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1377
Query 301 GAGAGAATCTTAG-CTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 359
||||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1378 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 1436
Query 360 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGAAAATTAATCGACGGATTTCTCGC 419
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1437 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 1496
Query 420 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 479
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1497 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 1556
Query 480 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 539
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1557 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 1616
Query 540 GGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTCA 599
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 1617 GGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTCA 1676
Query 600 GAAACTGACGTTGGAAGCATGCACACACGCCGCGCAAAACGAGTGGCTTCCGCTACGAGC 659
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1677 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 1736
Query 660 CGTCGTACAAGTTCTCTTCTTCGAG 684
|||||||||||||||||||||||||
Sbjct 1737 CGTCGTACAAGTTCTCTTCTTCGAG 1761
> AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774
REVERSE LENGTH=2719
Length=2719
Score = 845 bits (457), Expect = 0.0
Identities = 514/542 (95%), Gaps = 2/542 (0%)
Strand=Plus/Minus
Query 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAATTTCAGAGAATGAA 60
|||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1304 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1245
Query 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 120
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1244 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1185
Query 121 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 180
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1184 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1125
Query 181 ATTTGCCGTGATCTATTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 240
|||||||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1124 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1065
Query 241 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1064 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1005
Query 301 GAGAGAATCTTAG-CTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 359
||||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1004 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 946
Query 360 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGAAAATTAATCGACGGATTTCTCGC 419
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 945 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 886
Query 420 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 479
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 885 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 826
Query 480 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 539
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 825 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 766
Query 540 GG 541
||
Sbjct 765 GG 764
Score = 243 bits (131), Expect = 2e-63
Identities = 141/146 (97%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 539 AGGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTC 598
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 684 AGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTC 625
Query 599 AGAAACTGACGTTGGAAGCATGCACACACGCCGCGCAAAACGAGTGGCTTCCGCTACGAG 658
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 624 AGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAG 565
Query 659 CCGTCGTACAAGTTCTCTTCTTCGAG 684
||||||||||||||||||||||||||
Sbjct 564 CCGTCGTACAAGTTCTCTTCTTCGAG 539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5