BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916842

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52145.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   257    3e-68


> AT5G52145.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr5:21188602-21189001 FORWARD LENGTH=291
Length=291

 Score =  257 bits (139),  Expect = 3e-68
 Identities = 249/297 (84%), Gaps = 27/297 (9%)
 Strand=Plus/Plus

Query  16   AAACCCAGTTCTATCATTACCGTCCTCTTCGTCTTCTTCTTAGTTATCTCTGAAATGCCA  75
            ||| || ||||||||||||||||||||||| || ||||| ||||||||||| |||   ||
Sbjct  7    AAATCCGGTTCTATCATTACCGTCCTCTTCATCGTCTTCATAGTTATCTCT-AAA---CA  62

Query  76   GAGATAAAAGCGCAAGATAGTGATTGCTTGAAAGAATATGGAGGT--G--A-T----GTT  126
             | ||   |  | ||||||||||||||||||||||||||||||||  |  | |    |||
Sbjct  63   -A-AT---A--GAAAGATAGTGATTGCTTGAAAGAATATGGAGGTAAGGTAATATATGTT  115

Query  127  GGTTTCCCCT----TTT-GTGCAATTTTGATATTTCCGTCAGTA-TGTTATATAAAGTGT  180
            ||||||||||    ||| |||||||||||||||||| |||| || |||||||||||||||
Sbjct  116  GGTTTCCCCTGGCCTTTTGTGCAATTTTGATATTTCTGTCA-TACTGTTATATAAAGTGT  174

Query  181  CGCCAAGACAAGGGGGCTAAAGGCGGAAGATGCCAACACGGAGAGGAAGACGGTCATATT  240
            | | |||||||||||||| | ||||||||||||||| | ||| ||||||| ||||||| |
Sbjct  175  CACAAAGACAAGGGGGCTGATGGCGGAAGATGCCAATAGGGACAGGAAGAAGGTCATACT  234

Query  241  AAGTTCACGTGCTTTTGCGACTATTGTAACTCGTCGCCCTACCTAATCAAACTCTAA  297
            ||||| |||||||| |||||||||||| |||| ||||||||||| ||||||||||||
Sbjct  235  AAGTTGACGTGCTTATGCGACTATTGTGACTCTTCGCCCTACCTGATCAAACTCTAA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5