BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916842 Length=297 Score E Sequences producing significant alignments: (Bits) Value AT5G52145.1 | Symbols: | Encodes a defensin-like (DEFL) family... 257 3e-68 > AT5G52145.1 | Symbols: | Encodes a defensin-like (DEFL) family protein. | chr5:21188602-21189001 FORWARD LENGTH=291 Length=291 Score = 257 bits (139), Expect = 3e-68 Identities = 249/297 (84%), Gaps = 27/297 (9%) Strand=Plus/Plus Query 16 AAACCCAGTTCTATCATTACCGTCCTCTTCGTCTTCTTCTTAGTTATCTCTGAAATGCCA 75 ||| || ||||||||||||||||||||||| || ||||| ||||||||||| ||| || Sbjct 7 AAATCCGGTTCTATCATTACCGTCCTCTTCATCGTCTTCATAGTTATCTCT-AAA---CA 62 Query 76 GAGATAAAAGCGCAAGATAGTGATTGCTTGAAAGAATATGGAGGT--G--A-T----GTT 126 | || | | |||||||||||||||||||||||||||||||| | | | ||| Sbjct 63 -A-AT---A--GAAAGATAGTGATTGCTTGAAAGAATATGGAGGTAAGGTAATATATGTT 115 Query 127 GGTTTCCCCT----TTT-GTGCAATTTTGATATTTCCGTCAGTA-TGTTATATAAAGTGT 180 |||||||||| ||| |||||||||||||||||| |||| || ||||||||||||||| Sbjct 116 GGTTTCCCCTGGCCTTTTGTGCAATTTTGATATTTCTGTCA-TACTGTTATATAAAGTGT 174 Query 181 CGCCAAGACAAGGGGGCTAAAGGCGGAAGATGCCAACACGGAGAGGAAGACGGTCATATT 240 | | |||||||||||||| | ||||||||||||||| | ||| ||||||| ||||||| | Sbjct 175 CACAAAGACAAGGGGGCTGATGGCGGAAGATGCCAATAGGGACAGGAAGAAGGTCATACT 234 Query 241 AAGTTCACGTGCTTTTGCGACTATTGTAACTCGTCGCCCTACCTAATCAAACTCTAA 297 ||||| |||||||| |||||||||||| |||| ||||||||||| |||||||||||| Sbjct 235 AAGTTGACGTGCTTATGCGACTATTGTGACTCTTCGCCCTACCTGATCAAACTCTAA 291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13723095477 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5