BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916851

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52220.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Chromosom...   542    1e-153


> AT5G52220.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Chromosome 
transmission fidelity protein 8 (InterPro:IPR018607); Has 
127 Blast hits to 127 proteins in 63 species: Archae - 0; 
Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses 
- 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:21207097-21207678 
REVERSE LENGTH=438
Length=438

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 329/347 (95%), Gaps = 0/347 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCCAGTGGGCGATTGTA  60
            ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct  1    ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCGAATGGGCGATCGTA  60

Query  61   GAACTTCAAGGAGTTGTCGAGACTCAAGCTTCGTTCCAAGGTTCTATTCAGAATCTTGAG  120
            || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  61   GAGCTTCAAGGAGTCGTCGAGACTCAAGCTTCCTTCCAAGGTTCTATTCAGAATCTCGAG  120

Query  121  ATCGGTCGTCTCTGTCACTCCGATTCCTCACAGGGAACGTACACGTTCACGGTTGGTTAC  180
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  121  ATCGGTCGTCTCTGCCACTCCGATTCCTCACAGGGAACATACACGTTCACGGTGGGTTAC  180

Query  181  CATGAACTCGCAGGCTCTAAAGTGCCTCTGAAGAAGCCATTACTGGTTTTGAAGAAACTT  240
            |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |||
Sbjct  181  CATGAACTCGTAGGCTCTAAAGTGACTCTAAAGAAGCCATTACTGGTTTTGAAGAAGCTT  240

Query  241  CAATTTGATGAAGTTTCAGGGAAAGCAACGGAACTTGAAGTTGTTGGGATTATACGAACA  300
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  241  CAATTTGATGAAGTTTCAGGGAAAGCAACGGAGCTTGAAGTTGTTGGGATTATACGAACA  300

Query  301  AAGATCTTGTTTAAGACCAGACCTAAGCCTCTCATTTCTGGTAACAA  347
            |||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct  301  AAGATCTTGTTTAAAACCAGACCTAAGCCTCTTATTTCCGGTAACAA  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5