BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916851 Length=387 Score E Sequences producing significant alignments: (Bits) Value AT5G52220.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Chromosom... 542 1e-153 > AT5G52220.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:21207097-21207678 REVERSE LENGTH=438 Length=438 Score = 542 bits (293), Expect = 1e-153 Identities = 329/347 (95%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 1 ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCCAGTGGGCGATTGTA 60 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| Sbjct 1 ATGGAGATTCGAGTGAAGTGTAGATGTGGAGAAGAAGAGTGTAGCGAATGGGCGATCGTA 60 Query 61 GAACTTCAAGGAGTTGTCGAGACTCAAGCTTCGTTCCAAGGTTCTATTCAGAATCTTGAG 120 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 61 GAGCTTCAAGGAGTCGTCGAGACTCAAGCTTCCTTCCAAGGTTCTATTCAGAATCTCGAG 120 Query 121 ATCGGTCGTCTCTGTCACTCCGATTCCTCACAGGGAACGTACACGTTCACGGTTGGTTAC 180 |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 121 ATCGGTCGTCTCTGCCACTCCGATTCCTCACAGGGAACATACACGTTCACGGTGGGTTAC 180 Query 181 CATGAACTCGCAGGCTCTAAAGTGCCTCTGAAGAAGCCATTACTGGTTTTGAAGAAACTT 240 |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||| Sbjct 181 CATGAACTCGTAGGCTCTAAAGTGACTCTAAAGAAGCCATTACTGGTTTTGAAGAAGCTT 240 Query 241 CAATTTGATGAAGTTTCAGGGAAAGCAACGGAACTTGAAGTTGTTGGGATTATACGAACA 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CAATTTGATGAAGTTTCAGGGAAAGCAACGGAGCTTGAAGTTGTTGGGATTATACGAACA 300 Query 301 AAGATCTTGTTTAAGACCAGACCTAAGCCTCTCATTTCTGGTAACAA 347 |||||||||||||| ||||||||||||||||| ||||| |||||||| Sbjct 301 AAGATCTTGTTTAAAACCAGACCTAAGCCTCTTATTTCCGGTAACAA 347 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18247192887 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5