BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916864
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52330.1 | Symbols: | TRAF-like superfamily protein | chr5:... 1363 0.0
AT1G04300.3 | Symbols: | TRAF-like superfamily protein | chr1:... 1184 0.0
> AT5G52330.1 | Symbols: | TRAF-like superfamily protein | chr5:21247596-21250425
REVERSE LENGTH=1282
Length=1282
Score = 1363 bits (738), Expect = 0.0
Identities = 1068/1220 (88%), Gaps = 51/1220 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGAGACTGATGTGGATGATGATTATGATGGCCTTAAACCTTCTGAATTATTTGGG 60
|||||| ||||||||||||||||||| | |||| |||||||| ||||| |||| |||
Sbjct 89 ATGGCAAAGACTGATGTGGATGATGA--GT-ATGGTCTTAAACCCTCTGAGTTATATGGA 145
Query 61 AAACATACATGGAAGATTGAGAAATTTTCACAAGTCGGCAAAAGGGAGTTCCG-TAGCAA 119
||| |||||||||||||| |||||||||||||| || ||||||||||||| || |||| |
Sbjct 146 AAAAATACATGGAAGATTAAGAAATTTTCACAAATCAGCAAAAGGGAGTT-CGCTAGC-A 203
Query 120 TTG-GTTTGAAGCTGGCGGATACAATTGGTATATTTTAATTTATCCAGAAGGATGTGATG 178
|| |||||| ||| || |||| |||| |||||||||| |||||||||||||||||||
Sbjct 204 GTGTTTTTGAAATTGGAGGCTACAGTTGGCATATTTTAATGTATCCAGAAGGATGTGATG 263
Query 179 TTAGCAATTATCTCTCATTATTTCTCTGTGTTGCAAACTATGATAAACTTCTTCCAGGCT 238
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 264 TTAGCAATCATCTCTCATTATTTCTCTGTGTTGCAAACCATGATGAACTTCTTCCAGGCT 323
Query 239 GGAGTCAGTTCGCTCAGTTTACTATATCTGTGGTGCATAAAGATCCAAAGAAGTCTAAGT 298
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 324 GGAGTCAGTTGGCTCAGTTTACTATATCTGTGATGCATAAAGATCCAAAGAAGTCTAAGT 383
Query 299 CTGCAGATACGTTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAAAAGTTTA 358
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTTCAGATACGCTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAAAAGTTTA 443
Query 359 TGGAGTTACCCAAGTTACATGATGGGTTCATAGATGATTTTGGCTCTCTTACAATTGAGG 418
|||||||||| ||||||| ||||| ||||||||||||| ||||| ||||||||||||
Sbjct 444 TGGAGTTACCGAAGTTACGGGATGGCTTCATAGATGATTCTGGCTGTCTTACAATTGAAA 503
Query 419 CTCATGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTTTCGCTGCCTTAATTATGATT 478
|| | ||||||||||||||||||||||||||||||||||| | | |||| |||||| ||
Sbjct 504 CTAAAGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTT-CT-T-CCTTGATTATGGTT 560
Query 479 ACAAGAAAGAGCTTGTTAGGGTGTATTTGCCAAATGTAGAGCAAATTTTCCGACGTTTTG 538
|||||| ||| |||||||||||||||| | |||| ||||||||||||||| ||| ||||
Sbjct 561 ACAAGACAGAAATTGTTAGGGTGTATTTTCGAAATATAGAGCAAATTTTCCTACGCTTTG 620
Query 539 TGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGAAAGAGGACAAGGCCAAATGGACAGGCT 598
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 621 TGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGATAGAGGACAAGGCCAAATGGACAAGCT 680
Query 599 TTGGTGATTTCTGGTTAGGGATGGACCAAAACTCTAGGCAACG-GATGTCTAGAGAGAAA 657
| |||| |||||||||||| |||||| |||||||||||| | ||||||||||||||||
Sbjct 681 TCGGTGTTTTCTGGTTAGGAATGGACAAAAACTCTAGGCGT-GAGATGTCTAGAGAGAAA 739
Query 658 ATGGACGAAATCCTAAAAGGAGTTGTAAAACACTTTTTCAAAGAAAAGGAAGTTTCATCT 717
||||||| ||||||||||||| |||||||||||||||||| ||||| | ||| ||||
Sbjct 740 ATGGACGTAATCCTAAAAGGATTTGTAAAACACTTTTTCATGGAAAATGTTGTTACATCA 799
Query 718 CCTGTGGTGATGGATTTCTTGTATAGTGGGTTGAAGGATCTTGAAGGCCAAACTAAGAAC 777
||| | | |||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 800 CCTATAGCGATGGATTGCTTGTATAATGGGTTGAAGGATCTTGAAGTCCAAACTAAGAAC 859
Query 778 AAGAAAGCTAGCCCAAGACTGTTAGATGCCAAGGAATTGCCAGCTCCGTTGGTTAACGTG 837
|||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 860 AAGAAAGCTAGCCCAAAACTGTTAGATGACAAGGAATTGCCAGCTCCGTTTGTTAAAGTG 919
Query 838 GACAAAGATATGTTCCTATTAGTTGATGATGATGTGCTGTTACTCCTA-------C---A 887
|||| |||||||||| |||||||||||||||||||| ||||||||||| | |
Sbjct 920 GACAGAGATATGTTCGTATTAGTTGATGATGATGTGTTGTTACTCCTAGAGAGGGCTGCA 979
Query 888 ------GAGAG--CTGCTCTAGAGCCATTGCCTCCAAAAGATGAGAATGGTCCTCAAAAT 939
||||| |||||| ||||||||||||||| |||||||| || | || ||||||
Sbjct 980 CTCCTAGAGAGGGCTGCTCCAGAGCCATTGCCTCCGAAAGATGATAAAGCTCTTCAAAAC 1039
Query 940 CGTATTAAGGATGG-CAATGATGGAGAAGAGGTCAACATGGAAGCTTATGAGCGTGATGA 998
||||||||||| || ||| |||| |||||| |||||| ||||||||||||| || |
Sbjct 1040 CGTATTAAGGA-GGACAAGGATGAAGAAGATATCAACAAGGAAGCTTATGAG----AT-A 1093
Query 999 GATACGTTTAACTGAGTTGGGTAAACGAACTGTGGAGATATTTGTTCTTGACCATATCTT 1058
| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1094 --T--GTTTAAATGAGTGGGGTAGACGAACTGTGGAGATATTTGTTCTTGACCATATCTT 1149
Query 1059 TAGCAGCAAAATTGAGGTTGCATATCAA-GAAGCTATTGTGCTAAAAAGGCAGGAAGAAC 1117
||||| ||| ||||||||||||| ||| |||||||||| ||| ||||||||||||||||
Sbjct 1150 TAGCA--AAA-TTGAGGTTGCATA-CAAAGAAGCTATTGCGCTTAAAAGGCAGGAAGAAC 1205
Query 1118 TTATTCGTGAGGAAGAGGAAGAAGCGTCGAAACGGAGCAAAGGGCTGAAAAAAGG-TTTT 1176
|||| ||||| ||||||||| | | || ||||||||||||| ||| |||||||| ||||
Sbjct 1206 TTATCCGTGAAGAAGAGGAA-A--CTTCAAAACGGAGCAAAGTGCT-AAAAAAGGGTTTT 1261
Query 1177 GGGAAATGTAGACTGAATTA 1196
||||||||||||||||||||
Sbjct 1262 GGGAAATGTAGACTGAATTA 1281
> AT1G04300.3 | Symbols: | TRAF-like superfamily protein | chr1:1148659-1154652
REVERSE LENGTH=3610
Length=3610
Score = 1184 bits (641), Expect = 0.0
Identities = 992/1154 (86%), Gaps = 53/1154 (5%)
Strand=Plus/Plus
Query 22 GATGATTATGATGGCCTTAAACCTTCTGAATTATTTGGGA-AACATACATGGAAGATTGA 80
|||||| || ||||||| ||||| ||||| |||| | ||| | |||| |||||||||
Sbjct 368 GATGATGATTATGGCCTGAAACCCTCTGAGTTATAT-GGACAGTATACTTGGAAGATTCC 426
Query 81 GAAATTTTCACAAGTCGGC-AAAAGGGAG-TTCCGTAGCAATTG-GTTTGAAGCTGGCGG 137
|||||||||| || || | ||||||||| | |||||||| || ||||||||||||||
Sbjct 427 GAAATTTTCAGAAATC-ACTAAAAGGGAGCAT-CGTAGCAA-TGTTTTTGAAGCTGGCGG 483
Query 138 ATACAATTGGTATATTTTAATTTATCCAGAAGGATGTGATGTTAGCAATTATCTCTCATT 197
||||| ||||||||||||||||||||| |||||||||||||| | ||| ||||||| ||
Sbjct 484 TTACAAATGGTATATTTTAATTTATCCACAAGGATGTGATGTTTGTAATCATCTCTCCTT 543
Query 198 ATTTCTCTGTGTTGCAAACTATGAT-AA--------A----C--TT-CT-TC-------C 233
||||||||||||||||| |||||| || | | || || || |
Sbjct 544 GTTTCTCTGTGTTGCAAATTATGATAAACTTCTTCCAGGTTCTTTTGCTATCTTGGAGGC 603
Query 234 AGGCTGGAGTCAGTTCGCTCAGTTTACTATATCTGTGGTGCA-TAAAGATC-CAAAGAAG 291
||||||||||||||||||||||||||||||||||||| || | | |||||| | |||||
Sbjct 604 AGGCTGGAGTCAGTTCGCTCAGTTTACTATATCTGTGTTG-AGTCAAGATCTC-AAGAAA 661
Query 292 TCTAAGTCTGCAGATACGTTGCACCGGTTTTGGAAGAAAGAACATGATTGGGGATGGAAA 351
|| |||| | ||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 662 TCAAAGTTTTCAGATACACTGCACCGGTTTTGGAAGAAAGAGCATGATTGGGGATGGAAA 721
Query 352 AAGTTTATGGAGTTACCCAAGTTACATGATGGGTTCATAGATGATTTTGGCTCTCTTACA 411
|||||||||||||| || |||||| | || |||||||||||||| | ||||| |||||||
Sbjct 722 AAGTTTATGGAGTTGCCTAAGTTAAAAGACGGGTTCATAGATGAGTCTGGCTGTCTTACA 781
Query 412 ATTGAGGCTCATGTTCAGGTGATCAGAGACAGGGTGGACCGACCTTTTCGCTGCCTTAAT 471
||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 782 ATTGAGGCTAAAGTTCAGGTGATCAGAGAGAGGGTAGACCGACCTTTTCGCTGCCTTGAT 841
Query 472 TATGATTACAAGAAAGAGCTTGTTAGGGTGTATTTGCC-AAATGTAGAGCAAATTTTCCG 530
| | ||| | || ||| ||||||||||||||||| || |||||| |||||||||| |||
Sbjct 842 TGCGGTTATAGGAGAGAACTTGTTAGGGTGTATTT-CCAAAATGTGGAGCAAATTTGCCG 900
Query 531 ACGTTTTGTGGAGGAGAGAAGAAGCAAGCTTGAGAAGTTGAAAGAGGACAAGGCCAA-AT 589
||||||||| || |||| |||||||||||| | || ||||| ||||||||||| ||| ||
Sbjct 901 ACGTTTTGTTGAAGAGAAAAGAAGCAAGCTAGGGAGGTTGATAGAGGACAAGG-CAAGAT 959
Query 590 GGACAGGCTTTGGTGATTTCTGGTTAGGGATGGACCAAAACTCTAGGCAACGGATGTCTA 649
||||| |||| |||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 960 GGACAAGCTTCGGTGTTTTCTGGTTAGGGATGGACCAAAACTCTAGGCGTCGGATGTGTA 1019
Query 650 GAGAGAAAATGGACGAAATCCTAAAAGGAGTTGTAAAACACTTTTTCAAAGA-AAAGGAA 708
|||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 1020 GAGAGAAAGTGGACGTAATCCTAAAAGGAGTTGTAAAACACTTTTTCGTAGAGAAA-GAA 1078
Query 709 GTTTCATCTC-CTGTGGTGATGGATTTCTTGTATAGTGGGTTGAAGGATCTTGAAGGCCA 767
|||||||| | || |||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 1079 GTTTCATC-CACTTTGGTGATGGATTCCTTGTATAGTGGGTTGAAGGCTCTAGAAGGCCA 1137
Query 768 AACTAAGAACAAGAAAGCTAGCCCAAGACTGTTAGATGCCAAGGAATTGCCAGCTCCG-T 826
||||||||||| ||||||||| | ||||| |||||||||||| |||||||||| ||| |
Sbjct 1138 AACTAAGAACATGAAAGCTAGGTCGAGACTTTTAGATGCCAAGCAATTGCCAGCACCGAT 1197
Query 827 TGGTTAACGTGGACAAAGATATGTTCCTATTAGTTGATGATGATGTGCTGTTACTCCTAC 886
| |||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1198 T-GTTAGCGTGGACAAAGATATGTTCGTATTAG-T--TGATGATGTGCTGTTACTCCTAG 1253
Query 887 AGAGAGCTGCTCTAGAGCCATTGCCTCCAAAAGATGAGAATGGTC-CTCAAAATCGTATT 945
||||||||||||| ||||||||||||||||||||||| || |||| | || || ||||
Sbjct 1254 AGAGAGCTGCTCTTGAGCCATTGCCTCCAAAAGATGAAAAAGGTCGC-CAGAACCGTACA 1312
Query 946 AAGGATGGCAATGATGGAGAAGAGGTCAACATGGAAGCTTATGAGCGTGATGAGATACGT 1005
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 1313 AAGGATGGCAATGATGGAGAAGAGGTCAACAAGGAAGCCGATGAGCGTGATGAGAGACGT 1372
Query 1006 TTAACTGAGTTGGGTAAACGAACTGTGGAGATATTTGTTCTTGACCATATCTTTAGCAGC 1065
|||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| |||| |
Sbjct 1373 TTAACTGAATTGGGTAGACGAACTGTGGAGATATTTATTCTTTCCCATATCTTCAGCA-C 1431
Query 1066 -AAAATTGAGGTTGCATATCAAGAAGCTATTGTGCTAAAAAGGCAGGAAGAACTTATTCG 1124
||||| || |||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1432 TAAAATCGAAGTTGCACATCAAGAAGCTATCGCGCTAAAAAGGCAGGAAGAACTTATTCG 1491
Query 1125 TGAGGAAGAGGAAG 1138
||||||||||||||
Sbjct 1492 TGAGGAAGAGGAAG 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5