BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916865
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52340.1 | Symbols: ATEXO70A2, EXO70A2 | exocyst subunit exo... 3070 0.0
> AT5G52340.1 | Symbols: ATEXO70A2, EXO70A2 | exocyst subunit exo70
family protein A2 | chr5:21250802-21253939 FORWARD LENGTH=1896
Length=1896
Score = 3070 bits (1662), Expect = 0.0
Identities = 1818/1896 (96%), Gaps = 0/1896 (0%)
Strand=Plus/Plus
Query 1 ATGGGGGTGGCTCAAGCCATGGAAGCCCTAACCGAGCGAGCAGGCTTGATGAAGGAGTCT 60
||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1 ATGGGGGTGGCTCAAGCAATGGAAGCCCTAACCGAGCGAGCAAGTTTGATGAAAGAGTCT 60
Query 61 CTACATAAGAGCCAAACCATCACCGATAACATGGTCGGAATCCTAGGTTCTTTCGATCAT 120
| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TTGCATAAGAGCCAGACCATCACCGATAACATGGTCGGAATCTTAGGTTCTTTCGATCAT 120
Query 121 CGTCTCTCGGCTCTTGAAACCGCCATGCGTCCCACACAGATAAGAACACATTCTATAAGG 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTCTCTCGGCTCTTGAAACCGCAATGCGTCCCACACAGATAAGAACACATTCTATAAGG 180
Query 181 AGAGCTCATGAGAATATTGACAAGGCATTGAAAGCAGCTGAGGTTATATTGGATCAATTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAGCTCATGAGAATATTGACAAGGCATTGAAAGCAGCTGAGGTTATATTGGATCAATTT 240
Query 241 GATATCTCTAGAAAGGCTGAAGCTAAAATATTGAGAGGACCACATGAGGATCTTGAAAGC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATATCTCTAGAAAGGCGGAAGCTAAAATATTGAGAGGACCACATGAGGATCTTGAAAGC 300
Query 301 TATCTGGAAGCAATTGATCAACTAAGAGGCACTATCAAATTCTTCAGCAACAACAAGATG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TATCTGGAAGCAATTGATCAACTAAGAGGCACTATCAAATTCTTCAGCAACAACAAAATG 360
Query 361 TTTAAAAGTGCTAGTGGAGTTATTAGTCATGCTCACGGTTTACTCTCTAAGGCTCTATCA 420
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 361 TTCAAAAGTGCTAGTGGAGTTATTAGTCATGCTCACGGTTTACTTTCTAAAGCTCTATCA 420
Query 421 AAGCTAGAAGATGAGTTCAGACAGATACTGCAAAACTACAGTAAGCCAATGGAACCTGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCTAGAAGATGAGTTCAGACAGATACTGCAAAACTACAGTAAGCCAATGGAACCTGAT 480
Query 481 CGCCTTTTCGAATGTCTTCCAAGTAATCTTCGACCGTCATCAGAAGGCGAAGGTGGTGGT 540
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 CGCCTTTTCGAATGTCTTCCGAGTAATCTTCGACCATCATCAGAAGGTGAAGGTGGTGGT 540
Query 541 GGAAAGAGTCATGATCCGCACCACAAGAGCTTAGAAAACGCTATTTTTACTGTCCCAACT 600
||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAAAGACTCATGATCCCCATCACAAGAGCTTAGAAAACGCTATTTTTACTGTCCCAACT 600
Query 601 GTCATTCCTCCAAGGGTTCTGCCTCTGCTTCATGACTTGGCCCAACAGATGGTTCAAGCT 660
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 601 GTCATTCCTCCAAGGGTTCTGCCTCTGCTTCATGACTTAGCTCAACAAATGGTTCAAGCT 660
Query 661 GGTCATCAGCAACAACTTTTCAAATCTTACAGGGATACTCGAGCTGCGGTGTTGGAACAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTCATCAGCAACAACTTTTCAAATCTTACAGGGATACTCGAGCTGCGGTGTTGGAACAG 720
Query 721 AGTTTGCGGAAATTAGGTGTGGAGAGGCTTAGCAAAGATGATGTTCAGAGAATGCAATGG 780
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGTTTGAGGAAATTAGGAGTGGAGAGGCTTAGCAAAGATGATGTTCAGAGAATGCAATGG 780
Query 781 GAGGTCTTAGAGGCCAAGATTGGGAACTGGATACATTACATGAGAATATCCGTGAAACTG 840
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 GAGGTATTAGAGGCCAAGATTGGGAATTGGATACATTACATGAGAATATCCGTGAAACTG 840
Query 841 TTATTTGCTGCGGAAAAGAAAATCTGCGACCAAATACTCGATGGTGTTGAGTCTCTCAGA 900
||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 841 TTATTCGCCGCGGAAAAGAAAATCTGCGACCAAATTCTTGATGGTGTTGAGTCTCTCAGA 900
Query 901 GATCAATGTTTTGGTGAAGTCACTGTAAATAGTGTAGCTGTGCTGCTTAGTTTTGGGGAG 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 GATCAATGTTTTGGTGAGGTCACTGTAAATAGTGTAGCTGTGCTGCTTAGTTTCGGGGAG 960
Query 961 GCTATCGCTAAAAGCAAGAGATCACCGGAAAAACTGTTTGTTCTGTTAGATATGTATGAA 1020
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 GCTATTGCTAAAAGCAAGAGATCACCTGAAAAACTGTTTGTTCTGTTAGATATGTATGAA 1020
Query 1021 ATAATGAGAGAGCTTCAACCCGAGATAGAGTTGCTCTTTGGAAGCAAACCTTGTGCCGAG 1080
||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1021 ATAATGAGAGAGCTTCAGCCTGAGATTGAGTTGCTCTTTGGAAGCAAACCATGTGCTGAG 1080
Query 1081 ATGAAAGAATCAGCGCTGAATCTGACAAAGCGATTAGCTCAGACAGCTCAAGAAACTTTT 1140
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 ATGAAAGAATCCGCGCTGAATCTGACAAAGCGGTTAGCTCAGACAGCTCAAGAAACTTTT 1140
Query 1141 GCTGATTTTGAAGAGGCAGTTGAAAAGGATGCTACAAAAACCGCGGTTATGGATGGAACC 1200
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GCTGATTTTGAAGAAGCGGTTGAAAAGGATGCTACGAAAACCGCGGTTATGGATGGAACC 1200
Query 1201 GTACATCCGCTTACTAGCTACGTTATAAATTACGTCAAGTTCTTGTTTGATTACCAATCG 1260
|| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 1201 GTTCATCCACTTACTAGCTACGTTATAAATTATGTCAAGTTCTTGTTCGATTACCAAACG 1260
Query 1261 ACGTTGAGGCTACTTTTTCAAGAATTTGACAGTAAAGATCCTGATAGCGAGCTGGGAGCG 1320
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1261 ACGTTGAGGCTACTTTTTCAAGAGTTTGATAGTAAAGATCCTGATAGCGAGCTTGGAGCT 1320
Query 1321 GTAACAACGAGGATCATGCACGCATTACAGAACAATCTGGATGGAAAATCGAAGCAGTAC 1380
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1321 GTAACAACGAGGATCATGCACGCTTTACAGAATAATCTGGATGGTAAATCGAAGCAGTAC 1380
Query 1381 AAAGATGCAGCATTAACTCAACTATTCCTAATGAACAATGTTCACTACATAGTGAGATCT 1440
||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1381 AAAGATGTAGCATTAACTCAACTTTTCCTAATGAACAATGTTCACTATATAGTGAGATCT 1440
Query 1441 GTCAGGAGGTCAGAAGCAAAGGATTTATTAGGTGATGATTGGGTTCAAATACATCGAAGA 1500
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GTTAGGAGGTCAGAAGCAAAAGATTTATTAGGTGATGATTGGGTTCAAATACATCGAAGA 1500
Query 1501 ATAGTACAACAACACGCTAATCAATACAAGAGAGTTTCTTGGGCAAAGATTTTGCAGTGT 1560
|| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1501 ATTGTACAACAACATGCAAATCAGTACAAGAGAGTTTCTTGGGCAAAGATTTTGCAGTGT 1560
Query 1561 CTCACGGTTCAGTCGAGTGGGAGTGGTCCGATAGAAAACTCAAATATATCTAGAGCATCA 1620
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1561 CTCACGGTTCAGTCGAGTGGGAGCGGTCCGATAGAAAACTCAAATATATCAAGAGCATCA 1620
Query 1621 GTAAAAGACAGATTCAAGACTTTCAATTCTCTGTTTGAAGAGCTTCACCAAAGACAATGC 1680
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1621 GTAAAAGACAGATTCAAGACTTTCAATTCTCAGTTTGAAGAGCTTCACCAAAGACAATGC 1680
Query 1681 CAATGGACAGTTCCGGACAGCGAGTTGCGTGAATCTCTCAGACATGCTGTTTCGGAAGTT 1740
|||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||
Sbjct 1681 CAATGGACAGTTCCGGACAGCGAGTTGCGTGAATCTCTTAGACTTGCTGTTGCGGAAGTT 1740
Query 1741 CTCTTACCTGCCTTCAGATCGTTTCTTAAACGTTTCGGGCCGATGATAGAGAGTGGTAAG 1800
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1741 CTTTTACCTGCTTTCAGATCGTTTCTTAAACGTTTTGGGCCGATGATAGAGAGTGGTAAG 1800
Query 1801 AACCCACAGAAGTATATAAGGTTCAGTCCTGAAGATCTTGAGAGAATGCTTAACGAGTTC 1860
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1801 AACCCCCAGAAGTATATAAGGTTTAGTCCTGAAGATCTTGAGAGAATGCTTAACGAGTTC 1860
Query 1861 TTTGAAGGCAAGACTTGGAGTGAGCCAAAGAGATAA 1896
|||||||||||||| |||||||||||||||||||||
Sbjct 1861 TTTGAAGGCAAGACATGGAGTGAGCCAAAGAGATAA 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5