BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916881
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52490.1 | Symbols: | Fibrillarin family protein | chr5:212... 1288 0.0
> AT5G52490.1 | Symbols: | Fibrillarin family protein | chr5:21298857-21300239
FORWARD LENGTH=879
Length=879
Score = 1288 bits (697), Expect = 0.0
Identities = 820/878 (93%), Gaps = 13/878 (1%)
Strand=Plus/Plus
Query 1 ATGAGACCTCCCCACATAGGACGTGGTGGTGGTGGT--A-GTGGAAGAGGTTTAGCCAGA 57
|||| ||||||||| | ||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1 ATGAAACCTCCCCAAAGAGGACGTGGTGGTGGTGTTAGAGGTGGAAGAGGTTTAGCCAGA 60
Query 58 GGCGGTGAAGGAGGTGCCATAAGAGGCCGTGGCAGAGGCCGAGAAAGTGGCCCTGGAAGA 117
|||||||||||| ||||| |||||||| |||| |||||| | |||||||||| |||||||
Sbjct 61 GGCGGTGAAGGAAGTGCCGTAAGAGGCAGTGGAAGAGGCGGCGAAAGTGGCCGTGGAAGA 120
Query 118 --G--TAAAAAGCCG-TGAAAGTGAATC---CGGAGGAATTAAGGGAGGAAGCAAAGTGT 169
| | ||| | | |||||||||| ||| |||||||||||||||||||||||||
Sbjct 121 GGGCCT-GGAAG-AGTTAAAAGTGAATCGGACGGTGGAATTAAGGGAGGAAGCAAAGTGT 178
Query 170 TAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTG 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TAGTGACACCACACAGGCACGCAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTG 238
Query 230 TCACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGA 289
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TAACCAAGAACTTAGTTCCTGGTGAAATCATTTACAATGAGAAGAGAATCTTTGTTCAGA 298
Query 290 ACGAAGACCGATCTACAGTTGAATACAGAGTTTGGAACCCTCATAGGTCTAAGTTAGCTG 349
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 ACGAAGACCGATCTACTGTTGAATACAGAGTTTGGAACCCTCATAGATCTAAGTTAGCTG 358
Query 350 ATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAACGTTCTTTACC 409
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 359 ATGCTATTACCACTGGTGTTGATAACATTTGGATCAAACCTGGTGTTAAAGTTCTGTACC 418
Query 410 TTGGTGCTTCTTCCGGATACACTGTATCTCATATCTCTGACATTGTTGGTCCTGAGGGAT 469
||||||||||||| |||||||| || |||||| ||||||||||||||||||| |||||||
Sbjct 419 TTGGTGCTTCTTCTGGATACACCGTGTCTCATGTCTCTGACATTGTTGGTCCAGAGGGAT 478
Query 470 GTGTTTACGCTGTTGAGCATTCTCATATATGTGGTAAAGTTTTGATGAACATGGCGGAGA 529
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 479 GTGTTTACGCTGTTGAGCATTCTGATATTTGTGGTAAAGTTTTGATGAACATGGCGGAGA 538
Query 530 AGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCCAAGTACAGAATGC 589
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 539 AGAGAACTAATGTTATACCAATCATTGAAGATGCTAGACATCCTGCTAAATATAGAATGC 598
Query 590 TTGTGGGAATGGTTGATGTCATATTCTCTGATGTTAATCAACCAGATCAATCTAAGATAT 649
||||||||||||||||| |||||||||||||||||||||| || || ||| |||| ||||
Sbjct 599 TTGTGGGAATGGTTGATATCATATTCTCTGATGTTAATCACCCTGAGCAAGCTAACATAT 658
Query 650 TGGGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGTCACTTTATGATCTCTATAAAGG 709
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 TAAGTCTCAATGCTTCTTATTTCCTCAAATCTGGAGGGCACTTTATGATCTCTATAAAGG 718
Query 710 CAAATTCTATAGACTCAACAATTGCAGCAGAAACAGTGTATCAGATGGAAGTGGAGAAGC 769
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 CGAATTCTATAGACTCAACAATTGCAGCAGAAACTGTGTATCAGATGGAAGTGGAGAAGT 778
Query 770 TGCAAATGGAAGAGTTGAGACCAACAGAGATATTGCATATTGACTCTTGTGAGGAAAAGC 829
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 TACAAATGGAAGAGTTGAGACCAACAGAGATATTGCATCTTGACTCTTGTGAGGAAAAGC 838
Query 830 ATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAG 867
||||||||||||||||||||||||||||||||||||||
Sbjct 839 ATGCTTGTGTTTTTGGTGGATATCGCTTGCCTAGGAAG 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5